PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28348.m000077 | ||||||||
Common Name | RCOM_0234280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24064.1 Da PI: 6.2943 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.3 | 8.7e-23 | 25 | 70 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 + en +r+vtfskR++gi+KKA ELS+LC+ae+av++fs +gk++ 28348.m000077 25 KLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVF 70 6799***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-30 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.497 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-26 | 17 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.51E-32 | 17 | 91 | No hit | No description |
PRINTS | PR00404 | 6.1E-20 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-21 | 26 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-20 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-20 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDATEITNQR QRKTSKGRQK IEIKKLENVN RRYVTFSKRK HGIFKKATEL STLCGAEIAV 60 VLFSGHGKVF SCGNPDVDEV IDRYLAETEG DGGNSCLVES SSSSSSTAVQ TVDEQEYNKS 120 LARLEEMKRA VQMNSNVINN GEFWWDLPIE MMGKEELEGY KESLVKLRKN VLSKIEEMAA 180 NNAANESRII SQFIHQNGAW SGEIFNSNIY GGGLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 3e-15 | 16 | 97 | 16 | 94 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 3e-15 | 16 | 97 | 16 | 94 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28348.m000077 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600100.1 | 1e-87 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | B9T6Y7 | 1e-157 | B9T6Y7_RICCO; Mads box protein, putative | ||||
STRING | XP_002534006.1 | 1e-158 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | 28348.m000077 |