PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28226.m000857
Common NameRCOM_0205170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 225aa    MW: 24856.5 Da    PI: 6.0116
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28226.m000857genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.71.6e-1594144454
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                    ++r rr+ +NRe+ArrsR+RK+a ++  e  v +L++eN++L k+l+  ++
  28226.m000857  94 IRRIRRMVSNRESARRSRKRKQAHLQDIESQVYQLSGENSSLYKQLSFATQ 144
                    799***************************************999876555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1691155IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.04793156IPR004827Basic-leucine zipper domain
PfamPF001705.2E-1394140IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-1394146No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-1395145No hitNo description
CDDcd147021.04E-1796147No hitNo description
PROSITE patternPS00036098113IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MMDSLSNCGL GESLLWSQTT AKTEQSRIEA QSSVCVSSPI SPNNNNMNMN TNTNTNNKAE  60
AKSVRTRIST STSEQTDDED EAGPCEQSTN PVDIRRIRRM VSNRESARRS RKRKQAHLQD  120
IESQVYQLSG ENSSLYKQLS FATQQFRDAD TNNRVLKSDV EALRAKVKLA EDMVTRGGSL  180
SCSMNIQLLQ SINNLPNVSP TITINAPPPL DSTSDAVSSL TDLWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113RRSRKRK
2107114RRSRKRKQ
3109114SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28226.m000857
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527986.21e-162basic leucine zipper 9
SwissprotQ9FUD31e-52BZIP9_ARATH; Basic leucine zipper 9
TrEMBLB9SPR71e-163B9SPR7_RICCO; DNA binding protein, putative
STRINGXP_002527986.11e-163(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.16e-54basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-EspĂ­n A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]