PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28200.m000189
Common NameLOC8279865, RCOM_0195410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 359aa    MW: 41553.4 Da    PI: 6.991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28200.m000189genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.6e-5671371129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                    +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+yk+ePwdL++       +  e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk
  28200.m000189   7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElckiP--GteEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDK 99 
                    69****************************.9***************9545432..233667********************************** PP

            NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    ++++ +++l+g++ktLvfykgrap+g+k+dW+mheyrle
  28200.m000189 100 AIYA-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
                    ****.889*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-615157IPR003441NAC domain
PROSITE profilePS5100559.8917157IPR003441NAC domain
PfamPF023656.8E-298136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCKIPG  60
TEEQNEWYFF SHKDKKYPTG TRTNRATKAG FWKATGRDKA IYARHSLIGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLETNE NGTPQEEGWV VCRVFKKRMP TVRKVGEYDS PCWYDDQVSF  180
MPELDSPRRI TQPYATFLHH YPCKQEFELQ QYSIPHDPFL QLPQLESPKV PQSAASANCG  240
SVVPYGYDRN NGSTLQSSTL TQEEQVQQTH HQNLNSIYHN NGEQAVDQVT DWRVLDKFVA  300
SQLSHEDNAS KEGNYSNAAA AAFHVAQQMN LLANESKRPE LVQEYASTSR SSCQIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49615814169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28200.m000189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532571.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-161NAC7_ARATH; NAC domain-containing protein 7
TrEMBLB9T2V20.0B9T2V2_RICCO; NAC domain-containing protein, putative
STRINGXP_002532571.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-156NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]