PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28162.m000128
Common NameLOC8261730, RCOM_0179350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-X1
Protein Properties Length: 875aa    MW: 98591.3 Da    PI: 8.3544
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28162.m000128genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.4e-05401418118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG+H C + C+ G+CppC
  28162.m000128 401 CGRHACRRRCCDGDCPPC 418
                    ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.24E-674148No hitNo description
PROSITE patternPS01359075141IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.62475142IPR001841Zinc finger, RING-type
CDDcd060082.47E-6176224No hitNo description
SMARTSM004380.072188206IPR000967Zinc finger, NF-X1-type
CDDcd060081.03E-7230279No hitNo description
SMARTSM004380.24240260IPR000967Zinc finger, NF-X1-type
CDDcd060082.01E-8284327No hitNo description
SMARTSM004389.1E-4294313IPR000967Zinc finger, NF-X1-type
CDDcd060085.51E-8338387No hitNo description
SMARTSM004380.097348368IPR000967Zinc finger, NF-X1-type
CDDcd060081.87E-7391439No hitNo description
SMARTSM004380.021401420IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-10418466No hitNo description
SMARTSM004380.0069428447IPR000967Zinc finger, NF-X1-type
SMARTSM00438110485506IPR000967Zinc finger, NF-X1-type
SMARTSM0043853596629IPR000967Zinc finger, NF-X1-type
SMARTSM004380.33639657IPR000967Zinc finger, NF-X1-type
SMARTSM004380.51702723IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MSSSTSNHHQ PFSDSDSDSD QSNHHHQHTD LSNSIFKSYF SHTKNISDNT QSPTPQDLIK  60
IQSFLTSSSS GALSCLICLE RIKPSDPTWS CSSLCYAVFH LLCIQSWAQQ SSNLSAYRAS  120
TRLPISPERA AETATWNCPK CRSVYTKSLI PKTYFCFCGK IENPPHDNPW ILPHSCGEIC  180
NRPLKNNCGH HCLLLCHPGP CPSCPKLVKV KCFCGKIEDV KRCGFKFFSC NNKCDKLLDC  240
NIHKCEKICH DGDCCPPCEN RGVYRCFCGR RKEERKCCER EFKCENSCER MLGCGKHVCE  300
RGCHSGECGE CPLQGKRTCP CGKKVYEGIA CDIVVPVCGA TCDKTLSCGL HKCHERCHRG  360
QCIETCRLVV TKSCRCGGFR KEVPCYQDLV CERKCQTMRD CGRHACRRRC CDGDCPPCAE  420
ICGKRLRCKN HKCPSPCHRG PCAPCPVMVT ISCACGETHF DVPCGTEMDQ KPPRCRKLCG  480
IPPLCRHRSD CKPHRCHYGA CPPCRLLCEE EYPCGHKCNL RCHGPRPPPN PEFTLKPKKK  540
KPNHPNECTP GSPCPPCPEL VWRSCVGQHL GAERMMVCSD RTLFSCDNLC GNPLPCGNHY  600
CTKTCHALKS QSPKSLVQHL SEPCEKCHLP CEKERKPSCA HLCPLACHPG ECPPCKVLVK  660
RSCHCGSMVH IFECLYYNSL SEEKQMTVRS CGGSCHRKLP NCTHLCSETC HPGQCPSSDK  720
CSKKVTVRCS CQTLKKEWLC QDVQAAYRKA GRDPKDVSKS QFGSGLLPCN SDCKSKAQVV  780
DQELHLRKFK NLEEKEPDTV KNVAKRRKRR ERVQETKQIS RLEKFVATIK WILLVVTLVV  840
TLVTVAHFGY KGLMWLSDWM NEVEEQRQRQ RYPRI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28162.m000128
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533384.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB9T5650.0B9T565_RICCO; Nuclear transcription factor, X-box binding, putative
STRINGXP_002533384.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors