PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28162.m000128 | ||||||||
Common Name | LOC8261730, RCOM_0179350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NF-X1 | ||||||||
Protein Properties | Length: 875aa MW: 98591.3 Da PI: 8.3544 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.1 | 2.4e-05 | 401 | 418 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C + C+ G+CppC 28162.m000128 401 CGRHACRRRCCDGDCPPC 418 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 2.24E-6 | 74 | 148 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 75 | 141 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 8.624 | 75 | 142 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 2.47E-6 | 176 | 224 | No hit | No description |
SMART | SM00438 | 0.072 | 188 | 206 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.03E-7 | 230 | 279 | No hit | No description |
SMART | SM00438 | 0.24 | 240 | 260 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.01E-8 | 284 | 327 | No hit | No description |
SMART | SM00438 | 9.1E-4 | 294 | 313 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.51E-8 | 338 | 387 | No hit | No description |
SMART | SM00438 | 0.097 | 348 | 368 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.87E-7 | 391 | 439 | No hit | No description |
SMART | SM00438 | 0.021 | 401 | 420 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.38E-10 | 418 | 466 | No hit | No description |
SMART | SM00438 | 0.0069 | 428 | 447 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 110 | 485 | 506 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 53 | 596 | 629 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.33 | 639 | 657 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.51 | 702 | 723 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 875 aa Download sequence Send to blast |
MSSSTSNHHQ PFSDSDSDSD QSNHHHQHTD LSNSIFKSYF SHTKNISDNT QSPTPQDLIK 60 IQSFLTSSSS GALSCLICLE RIKPSDPTWS CSSLCYAVFH LLCIQSWAQQ SSNLSAYRAS 120 TRLPISPERA AETATWNCPK CRSVYTKSLI PKTYFCFCGK IENPPHDNPW ILPHSCGEIC 180 NRPLKNNCGH HCLLLCHPGP CPSCPKLVKV KCFCGKIEDV KRCGFKFFSC NNKCDKLLDC 240 NIHKCEKICH DGDCCPPCEN RGVYRCFCGR RKEERKCCER EFKCENSCER MLGCGKHVCE 300 RGCHSGECGE CPLQGKRTCP CGKKVYEGIA CDIVVPVCGA TCDKTLSCGL HKCHERCHRG 360 QCIETCRLVV TKSCRCGGFR KEVPCYQDLV CERKCQTMRD CGRHACRRRC CDGDCPPCAE 420 ICGKRLRCKN HKCPSPCHRG PCAPCPVMVT ISCACGETHF DVPCGTEMDQ KPPRCRKLCG 480 IPPLCRHRSD CKPHRCHYGA CPPCRLLCEE EYPCGHKCNL RCHGPRPPPN PEFTLKPKKK 540 KPNHPNECTP GSPCPPCPEL VWRSCVGQHL GAERMMVCSD RTLFSCDNLC GNPLPCGNHY 600 CTKTCHALKS QSPKSLVQHL SEPCEKCHLP CEKERKPSCA HLCPLACHPG ECPPCKVLVK 660 RSCHCGSMVH IFECLYYNSL SEEKQMTVRS CGGSCHRKLP NCTHLCSETC HPGQCPSSDK 720 CSKKVTVRCS CQTLKKEWLC QDVQAAYRKA GRDPKDVSKS QFGSGLLPCN SDCKSKAQVV 780 DQELHLRKFK NLEEKEPDTV KNVAKRRKRR ERVQETKQIS RLEKFVATIK WILLVVTLVV 840 TLVTVAHFGY KGLMWLSDWM NEVEEQRQRQ RYPRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28162.m000128 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533384.1 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | B9T565 | 0.0 | B9T565_RICCO; Nuclear transcription factor, X-box binding, putative | ||||
STRING | XP_002533384.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10225 | 32 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | 28162.m000128 |
Entrez Gene | 8261730 |