PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28102.m000106
Common NameLOC8286328, RCOM_0161240
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WOX
Protein Properties Length: 401aa    MW: 45168.8 Da    PI: 7.2226
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28102.m000106genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21.1e-2183142357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +R+++t+eql++Leel+++ +r+p++e++e+++k+l    +++ ++V++WFqN++a+e++
  28102.m000106  83 SRWNPTPEQLRALEELYRRgTRTPTTEQIEHITKQLrrygKIEGKNVFYWFQNHKARERQ 142
                    7*****************99**************************************97 PP
2Wus_type_Homeobox1131.6e-3682144365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+i++it++L++yGkie+kNVfyWFQN+kaRerqk+
      28102.m000106  82 SSRWNPTPEQLRALEELYRRGTRTPTTEQIEHITKQLRRYGKIEGKNVFYWFQNHKARERQKR 144
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.4E-580147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-983142IPR009057Homeodomain-like
PfamPF000462.7E-1983142IPR001356Homeobox domain
SuperFamilySSF466894.15E-1383150IPR009057Homeodomain-like
CDDcd000861.67E-684144No hitNo description
PROSITE profilePS5007111.45188143IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MWMMGYSDGG EFNMTADSFN GRKLRPLIPR TPGPNSTNNT SNSSPPTLSR LHGTDFFSLN  60
HHLATMADQS KRDFHTQPVV VSSRWNPTPE QLRALEELYR RGTRTPTTEQ IEHITKQLRR  120
YGKIEGKNVF YWFQNHKARE RQKRRRQMES AVPDHDQQQQ QQHHDIEIFE SKESEANRTG  180
YEGEQTKNWP PSTNCSTLPE ESISIHRAAK AAVAECRAGD GLIQFDEVEF QHRRSFMERN  240
ATWQMMQLSC PSPTHLINTS SSTSTNTTST TATTLTAAAT STATTTTSTA PTAAATRRTM  300
DPKLIKTSHD LNIFIAPYYR ENGNGLIYNY NNFNNSHVIN EQDNGCGESQ TLQLFPLRSG  360
GGGGDGNESI NDKETETSAV AAAMNANFTP YQFFEFLPLK N
Cis-element ? help Back to Top
SourceLink
PlantRegMap28102.m000106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532093.10.0WUSCHEL-related homeobox 1 isoform X1
TrEMBLB9T1H40.0B9T1H4_RICCO; Protein WUSCHEL, putative
STRINGXP_002532093.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-56WUSCHEL related homeobox 1