PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27964.m000347
Common NameRCOM_0129900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 277aa    MW: 30888.5 Da    PI: 5.1501
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27964.m000347genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-193084256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++++f++eq++ Le++Fe++  +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  27964.m000347 30 KNKRRFSDEQIKSLETMFESETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 84
                   67889*************************************************9 PP
2HD-ZIP_I/II121.44.5e-3931122293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +krr+s+eq+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L+ +l++
  27964.m000347  31 NKRRFSDEQIKSLETMFESETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILRANYNSLASRFESLKKEKQALALQLQK 122
                    79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-19888IPR009057Homeodomain-like
PROSITE profilePS5007118.4152686IPR001356Homeobox domain
SMARTSM003892.6E-162890IPR001356Homeobox domain
PfamPF000461.5E-163084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-193193IPR009057Homeodomain-like
CDDcd000861.62E-153587No hitNo description
PRINTSPR000311.1E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000311.1E-56682IPR000047Helix-turn-helix motif
PfamPF021837.3E-1786127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLDGGDFSSS SAAADPFPTT ISSRRNKRNK NKRRFSDEQI KSLETMFESE TRLEPRKKLQ  60
LAKELGLQPR QVAIWFQNKR ARWKSKQLER DYNILRANYN SLASRFESLK KEKQALALQL  120
QKLNNMMEKS RDQEGVCCEQ RVGSAVNSSE AESDNGEAIK CESEAKPRSV SVERSEHGLG  180
GPSDEDSSIK AEYFGLDQEE ANLMSIVEPA DGSLTSQEDW GSLDSDAFLI NQTLVVSGGI  240
SGLDCKINEL RTQGAKHGLS MQILFLVTGG AEFGDFY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27964.m000347
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529960.21e-163LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-7
SwissprotP468979e-72ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLB9SVE10.0B9SVE1_RICCO; Homeobox protein, putative
STRINGXP_002529960.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-56homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]