PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27956.m000359
Common NameLOC8268046, RCOM_0128280
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 329aa    MW: 37260.8 Da    PI: 7.5199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27956.m000359genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++ +G g+W+++++  g++R++k+c++rw +yl
    27956.m000359 13 RGLWSPEEDEKLIKFITTHGHGSWSSVPKLAGLHRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding52.31.3e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+  +vd+++ lG++ W+ Ia++++ gRt++++k++w++
    27956.m000359  66 RGSFTAQEERTIVDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-26463IPR009057Homeodomain-like
PROSITE profilePS5129419.153860IPR017930Myb domain
SuperFamilySSF466899.73E-3010107IPR009057Homeodomain-like
SMARTSM007171.6E-141262IPR001005SANT/Myb domain
PfamPF002495.3E-161360IPR001005SANT/Myb domain
CDDcd001674.97E-121660No hitNo description
PROSITE profilePS5129425.46161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2564116IPR009057Homeodomain-like
SMARTSM007172.2E-1565113IPR001005SANT/Myb domain
PfamPF002497.9E-1566109IPR001005SANT/Myb domain
CDDcd001671.45E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGHQCCSKQK VKRGLWSPEE DEKLIKFITT HGHGSWSSVP KLAGLHRCGK SCRLRWINYL  60
RPDLKRGSFT AQEERTIVDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHKLLSP KHNKQNRNNN HSNSNINPCK LIYDNAHQQP TSVFTISTSQ FSDFSMDIQT  180
VSFNHPFPSL PPPDVTDSSC PPSYISPNQN PKVQALLDCT NQSYPMGSVS TSCSTSYPSG  240
FGIIDENCLW SSELIIQPSR HEEMQVEQVV EIEKTNEFSS GKNNMDASLD QYSNFDFNFV  300
ESTLMPAGMY YSSSPIDQLA WDSQFLSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap27956.m000359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530124.10.0transcription factor MYB61
TrEMBLB9SVV50.0B9SVV5_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002530124.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-81myb domain protein 67