PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27895.m000041
Common NameLOC8258905, RCOM_0107600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 335aa    MW: 37092.6 Da    PI: 8.0801
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27895.m000041genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.71.6e-3473129459
    ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                    ++YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+
  27895.m000041  73 ITYKECLKNHAATLGGHALDGCGEFMPSPTAThTDPTSLKCAACGCHRNFHRREPED 129
                    79***************************9999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.1E-2873127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2373126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-3174126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.96175126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.61E-19206278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30209278IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-24217274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDIAPTTTST TNTNTNINTN TNTPTTKSPD QETETPTRIQ PPKPLSFTNG VLKRHHHHHH  60
HHHHLSAPPP VVITYKECLK NHAATLGGHA LDGCGEFMPS PTATHTDPTS LKCAACGCHR  120
NFHRREPEDS PPPHHPHPHH HPVNTTTTIE YQPHHRHHPP PPPPQAAQPY RSPNSASPPP  180
ISSSYPSAPH MLLALSGGVN ENSGLHIGGG GGGSSGRKRF RTKFSQTQKE RMHEFAERVG  240
WKMQKRDEEL VQEFCNEVGV DKGVLKVWMH NNKNTFARRD ANGHNGNSID RSNLDQDIHD  300
NNNNSSENVN HRHHHQHFEN DSVAHVATNG SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-202182751875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27895.m000041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534012.10.0zinc-finger homeodomain protein 9
SwissprotQ9LXG02e-77ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLB9T6Z30.0B9T6Z3_RICCO; Uncharacterized protein
STRINGXP_002534012.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-71homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]