PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27894.m000807
Common NameLOC8288279, RCOM_0107360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family DBB
Protein Properties Length: 290aa    MW: 31204.7 Da    PI: 6.068
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27894.m000807genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.35e-06447542
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  27894.m000807  4 QCNVCEAAEANVLCCADEAALCWGCDEKVHAAnklaskHQRVPL 47
                   7******99*********************66899999999986 PP
2zf-B_box24.84.5e-085595438
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                   ++C+ ++e    +fC +++ llC++C +++H        H+
  27894.m000807 55 PNCDICQETAGFFFCLEDRALLCRKCDVAIHTAnayvsgHQ 95
                   78******98999******************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.509147IPR000315B-box-type zinc finger
CDDcd000217.55E-7347No hitNo description
SMARTSM003367.7E-10447IPR000315B-box-type zinc finger
SMARTSM003362.5E-125299IPR000315B-box-type zinc finger
PROSITE profilePS501198.8875299IPR000315B-box-type zinc finger
PfamPF006436.5E-65595IPR000315B-box-type zinc finger
CDDcd000214.09E-85799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWGCDE KVHAANKLAS KHQRVPLSTS SSHIPNCDIC  60
QETAGFFFCL EDRALLCRKC DVAIHTANAY VSGHQRFLLT GVKVGLEPTD LGASSSSGKS  120
PSSEKTSEMI SHSVSRRGNP MPVASPHNYA LPAQVSGAGE VEQAKVSYFG GAAGGMPPWQ  180
IDEFLGLSDF NQNYGNMDNG SSKADSGKRS DSESSAFLRS ADEEVDGDEC LGQVPDSSWA  240
VPQIPSPPTS SGLYWPKRIH NQSDGADFVP DICCSTLQNH HHYHAKRRRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285289KRRRL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27894.m000807
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524543.10.0B-box zinc finger protein 22
SwissprotQ9SYM24e-96BBX22_ARATH; B-box zinc finger protein 22
TrEMBLB9SEX40.0B9SEX4_RICCO; Zinc finger protein, putative
STRINGXP_002524543.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-94light-regulated zinc finger protein 1