PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27805.m000021 | ||||||||
Common Name | LOC8259377, RCOM_0087900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 20474.9 Da PI: 4.7908 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 17 | 67 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r++k +g+Wv+eIr+p gk++r++lg++ ++e+Aa+a++ a++ ++g+ 27805.m000021 17 RYRGIRQRK-WGKWVSEIREP---GKKTRIWLGSYESPEMAAAAYDVAALHFRGH 67 69******9.**********8...557***********************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.76E-21 | 16 | 76 | No hit | No description |
Pfam | PF00847 | 4.1E-12 | 17 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-31 | 17 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 17 | 75 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.945 | 17 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 17 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 56 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEERSGDGAC VALAPQRYRG IRQRKWGKWV SEIREPGKKT RIWLGSYESP EMAAAAYDVA 60 ALHFRGHGAH LNFPELVDSL PRPASSSAED VQMAAQEAAV RFRRPIKCSE VGSGGGGGCG 120 GGGSGGGLVP VRIGLSPSQI QAINETPLDS PKMWMELAGA LLLAEPTVFG DNNDDFEFEE 180 THEDASIWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 16 | 79 | 4 | 68 | ATERF1 |
3gcc_A | 5e-17 | 16 | 79 | 4 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 123 | SGGGGGCGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27805.m000021 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534488.1 | 1e-138 | ethylene-responsive transcription factor ERF022 | ||||
Swissprot | Q9LQ28 | 9e-51 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | B9T8B9 | 1e-137 | B9T8B9_RICCO; DNA binding protein, putative | ||||
STRING | XP_002534488.1 | 1e-138 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 5e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 27805.m000021 |
Entrez Gene | 8259377 |