PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27798.m000612
Common NameLOC8273467, RCOM_0086960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 390aa    MW: 42330.3 Da    PI: 6.192
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27798.m000612genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-174994147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
    27798.m000612 49 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 94
                     79******************************.***********985 PP
2Myb_DNA-binding54.52.8e-17101145147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd +++ a++ +G++ W+ Iar ++ gRt++ +k++w++ 
    27798.m000612 101 RKPFTDEEDRIIAAAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 145
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.3254499IPR017930Myb domain
SuperFamilySSF466892.4E-3046142IPR009057Homeodomain-like
SMARTSM007176.2E-154897IPR001005SANT/Myb domain
PfamPF002492.8E-164994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2650101IPR009057Homeodomain-like
CDDcd001672.81E-145193No hitNo description
PROSITE profilePS5129422.049100150IPR017930Myb domain
SMARTSM007173.7E-16100148IPR001005SANT/Myb domain
PfamPF002491.2E-14101145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-23102149IPR009057Homeodomain-like
CDDcd001674.42E-12103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDLEMKEKTV VEVDGANSGD GGGEDGSGSG DDLLLAVEKT EACSKDRVKG PWSPEEDAIL  60
SRLVSKFGAR NWSLIARGIS GRSGKSCRLR WCNQLDPAVK RKPFTDEEDR IIAAAHAVHG  120
NKWAVIARLL PGRTDNAIKN HWNSTLRRKS TVCQRTRLAS GNMDQDAYLD KAKASSEETI  180
SCGDANSFKS LEGKDVSSLD NMDDQCEEKV PSQIPSTNEA KELPTVFRPR ARFSAFNVYN  240
PVDGPEAASP CLRSVPVHGP IVQTSTADDG ICKLLDGAYC EQMVPHHCGH GCCEAQNGNS  300
KQNSLLGPEF VDSLEPPSFP SFELAAIARD ISNLAWLKSG LENNNVRVMG ETASRITPHG  360
SGHLEDSRIS GKFHFDEGKN KLRGVITNVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-41461494107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27798.m000612
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527890.10.0transcription factor MYB1 isoform X1
SwissprotQ425751e-104MYB1_ARATH; Transcription factor MYB1
TrEMBLB9SPH10.0B9SPH1_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002527890.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-107myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]