PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27791.m000083
Common NameRCOM_0084020
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-X1
Protein Properties Length: 1745aa    MW: 190505 Da    PI: 8.2356
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27791.m000083genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.54.3e-06162180119
       zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                    C++H+C+k+CH GpC+pC+
  27791.m000083 162 CSRHRCEKICHMGPCDPCQ 180
                    9*****************6 PP
2zf-NF-X116.51.9e-05380398119
       zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                    CG+H+C++lCH G Cp C 
  27791.m000083 380 CGQHSCESLCHSGHCPACL 398
                    ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060086.62E-884145No hitNo description
SMARTSM004380.023107125IPR000967Zinc finger, NF-X1-type
PfamPF0142214109124IPR000967Zinc finger, NF-X1-type
CDDcd060082.74E-13152200No hitNo description
PfamPF014221.8E-4162179IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0021162181IPR000967Zinc finger, NF-X1-type
CDDcd060081.65E-11216262No hitNo description
PfamPF014220.013226243IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0026226245IPR000967Zinc finger, NF-X1-type
CDDcd060084.92E-15274320No hitNo description
PfamPF014220.052278301IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0046284303IPR000967Zinc finger, NF-X1-type
CDDcd060081.66E-5332391No hitNo description
PfamPF0142230342353IPR000967Zinc finger, NF-X1-type
SMARTSM00438200342376IPR000967Zinc finger, NF-X1-type
CDDcd060082.12E-9370413No hitNo description
PfamPF014223.3E-4380397IPR000967Zinc finger, NF-X1-type
SMARTSM004386.0E-4380399IPR000967Zinc finger, NF-X1-type
CDDcd060081.31E-6427475No hitNo description
PfamPF0142224437454IPR000967Zinc finger, NF-X1-type
SMARTSM004380.026437455IPR000967Zinc finger, NF-X1-type
CDDcd060081.57E-4480521No hitNo description
PfamPF014223.1490508IPR000967Zinc finger, NF-X1-type
SMARTSM0043810490520IPR000967Zinc finger, NF-X1-type
CDDcd060084.04E-5518567No hitNo description
PfamPF01422120522544IPR000967Zinc finger, NF-X1-type
SMARTSM004380.28529550IPR000967Zinc finger, NF-X1-type
PROSITE profilePS510619.04659728IPR001374R3H domain
PfamPF014243.1E-6660725IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.2E-4767820IPR012677Nucleotide-binding alpha-beta plait domain
TIGRFAMsTIGR007946.5E-21410021745IPR003855Potassium transporter
PfamPF027054.1E-17110041573IPR003855Potassium transporter
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 1745 aa     Download sequence    Send to blast
MVRRSASIWS CSSCYSIFHL NCIKKWARAP TSIDLSAEKN QGFNWRCPGC QSVQLTSSKE  60
IRYACFCRKR IDPPSDLYLT PHSCGEPCGK PLERGIPGLG ESNEDLCPHV CVLQCHPGPC  120
PPCKAFAPPR VCPCGKKVIT TRCSDRRSVL TCGQRCDKLL QCSRHRCEKI CHMGPCDPCQ  180
VLVNASCFCK KSVEVVLCGE MAIKGEVKAE DGVFSCNSIC GKKLGCGNHL CGETCHPGSC  240
GDCYLTPDRV TSCYCGKTSL EVERKCCLDP IPNCTQTCGK LLPCKIHHCK EVCHAGDCSP  300
CLVLVTQRCR CGSTSRTVEC FKTRVESEKF TCDKPCGRKK NCGRHRCSER CCPLSNPNSL  360
LSGDWDPHFC QMACGKKLRC GQHSCESLCH SGHCPACLET IFTDLSCACG RTSIPPPLPC  420
GTPPPSCQLP CSVPQPCGHS ASHSCHFGDC PPCSVPIAKE CVGGHVVLGN IPCGSKDIRC  480
NKLCGKTRQC GLHACGRTCH PPPCDASCGS EAGSRASCGQ TCGAPRRDCR HTCTAVCHPS  540
VSCPDVRCEF SVKITCSCTR ITALVPCDAG GSSSGFNADS VFEASIVQKL PVPLQPVESM  600
GKKIPLGQRK LMCDDECAKL ERKRVLADAF DITQNLEALH FGENSAVTEL IADVYRRDPK  660
WVLAVEERFK YLVLGKNRGS LSALKVHVFC PMLKDRRDAV RLIAERWKLT IYSAGREPKR  720
FIVVYVTPKS KAPSRVIGIK GTTTLLAPHP PTFDPLVDMD PRLVVSFLDL PREADISSLV  780
LRFGGECELL WFNDKNALAV FNDPARAATA MRRLDHGSAY HGAAVVYQNG SSSVTSAATN  840
PWGGAGGAQE GAASLKSWKN AVVPEDSWGS EEWSHGSVNV QASAWKGKET PIAASINRWT  900
LLDSESSVSS SAASIKTEDP ETRGGSCSSS GLESNASISY SSGELGGVSS RAELPEVVDD  960
WEKAHLNSGE ACASAVWKNV KGGPRTYSGG LEKETWRHTL TLSFQSLGVV YGRLSTAPLY  1020
VFGTIPAEEF LSDETAYEYF SFIFWTLTII SLLKYALIVL RANDSGEGGT FALYSLLCRH  1080
AKVGLLPDDR STHEVICHEG GSPQRTKVES RARRAIKKRK SSHYLMLFSA LFGACMIIGD  1140
AVLTPSISVL SASSGLQRSL SKIKYVPVPF ACAVLVCLFM LQKHGTHKIG CMFGPVVSLW  1200
LLFISGVGIY NIFQVNPKII GAISPAYMYK FVKNINKRSW RSLGSILLCV AGSEAMFADL  1260
GHFSKKSIQI TFTCLIYPLL VLCYAGQAAF ISKNVNTSKD FNHLSKSIPN HLGHVFIVLS  1320
LLASVIGSQA TITASFSIIN QCLALGCFPR VKVIHTSDNR HGQVYIPDVN WLLMVLCLTV  1380
TIGFRDLHKI ASAAGLAIVS GMVVTTCLMS LVIALQWEKP LYMSGCFLLF FGFVEAVYLS  1440
ACLLSFHKGG WYLVVLSAVT FTIMLAWHYG TKKKYEFDLQ NKVPTEWLTD FSPGLGVSRV  1500
PGIGLIYTDI VSGIPAFFSH FITNLPAFHQ VLIFVSFKSL SVPHVPPSER YLVGRVGAKD  1560
YRIYRCIVRY GYCDSVRDTD DFEQQIICCI GDFISLEEND QESLNSPEGR MMIVGKPSPE  1620
GKALIPLHGS CSTLGHPNME NDQTHVVSPG RNPVTRKKVR FMLPANSPKM LKPVREELQE  1680
LVNARESGTA YFLGQSHLAL RGSSDFIKRF LIMAYVFLDK NCREPPVALN IPHAALVEVG  1740
MVYTI
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27791.m000083
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614783.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLB9T6I00.0B9T6I0_RICCO; Potassium transporter
STRINGXP_002533849.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1