PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27757.m000022 | ||||||||
Common Name | RCOM_0074810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | G2-like | ||||||||
Protein Properties | Length: 182aa MW: 20554.9 Da PI: 9.3409 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103 | 1.8e-32 | 64 | 117 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++AtPk +l+lm+v+gL+++hvkSHLQ+YR+ 27757.m000022 64 PRLRWTPELHLCFVKAVERLGGQDRATPKLVLQLMNVNGLSIAHVKSHLQMYRS 117 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.683 | 60 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-31 | 60 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.78E-16 | 62 | 118 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.8E-24 | 64 | 119 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-10 | 65 | 116 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVGSDQSGCS ETKASRQNQE DESGSGENDG DESMPKNGAS SSNSTVEESD KKPSVRPYVR 60 SKMPRLRWTP ELHLCFVKAV ERLGGQDRAT PKLVLQLMNV NGLSIAHVKS HLQMYRSKKI 120 DDPSQVMADH RHLMKSGDRN IYNLSQLPML QGYHQRHASS YRYGDASWNA RENFVYNSHM 180 GR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 65 | 119 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27757.m000022 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534265.2 | 1e-134 | uncharacterized protein LOC8261789 | ||||
Refseq | XP_025015737.1 | 1e-134 | uncharacterized protein LOC8261789 | ||||
TrEMBL | B9T7P6 | 1e-134 | B9T7P6_RICCO; Uncharacterized protein (Fragment) | ||||
STRING | XP_002534265.1 | 1e-135 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-65 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 27757.m000022 |