PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

27742.m000246

Common Name

LOC8268536, RCOM_0067120

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

SRS

Protein Properties

Length: 344aa MW: 35836.5 Da PI: 8.1299

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
27742.m000246	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.3	8.3e-68	125	286	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 s ++sCqdCGnqakkdC+h+RCRtCCksrg+dCathvkstWvpaa+rrerq + ++a + s+ +++ k++r l +++++++s+t++s+++++ 27742.m000246 125 SSGTSCQDCGNQAKKDCTHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMVSTAIGGGTGSSvSTSGVKKPRLL-NSQTTTTSHTSTSNTTPP 219 55679*******************************************999998887776665477888888875.888999999***** PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++tss lP +v+++avf+cvrv+++ddge+e+aYq++v+igGhvfkG+LydqG+e+ 27742.m000246 220 RSFDTSSshqdvsfkeaLPGQVRAPAVFKCVRVTAMDDGEDEYAYQAVVKIGGHVFKGFLYDQGVET 286 *999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.9E-62	127	285	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.1E-27	129	171	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.5E-30	237	284	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MGMFVVAPAA SFNHHHHHHQ HESSINLAND PINGSNAATA LGVGVGVGVI PLLTAAPCHM 60 DDQDLLNNGR SNKISGIQFW QNQNQYNNIK KTTGSILDHN TCSANLLQSG NNTSGGGVVG 120 ANSASSGTSC QDCGNQAKKD CTHRRCRTCC KSRGYDCATH VKSTWVPAAR RRERQLMVST 180 AIGGGTGSSV STSGVKKPRL LNSQTTTTSH TSTSNTTPPR SFDTSSSHQD VSFKEALPGQ 240 VRAPAVFKCV RVTAMDDGED EYAYQAVVKI GGHVFKGFLY DQGVETRDGF PNISELHLGG 300 ASSGGDGGGR NGASSSPIID PSDVYGAASG GGLLGGSAYG NPMN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MGMFVVAPAA SFNHHHHHHQ HESSINLAND PINGSNAATA LGVGVGVGVI PLLTAAPCHM  60
DDQDLLNNGR SNKISGIQFW QNQNQYNNIK KTTGSILDHN TCSANLLQSG NNTSGGGVVG  120
ANSASSGTSC QDCGNQAKKD CTHRRCRTCC KSRGYDCATH VKSTWVPAAR RRERQLMVST  180
AIGGGTGSSV STSGVKKPRL LNSQTTTTSH TSTSNTTPPR SFDTSSSHQD VSFKEALPGQ  240
VRAPAVFKCV RVTAMDDGED EYAYQAVVKI GGHVFKGFLY DQGVETRDGF PNISELHLGG  300
ASSGGDGGGR NGASSSPIID PSDVYGAASG GGLLGGSAYG NPMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	27742.m000246

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530898.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	4e-85	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	B9SY29	0.0	B9SY29_RICCO; Transcription factor, putative
STRING	XP_002530898.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-72	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	27742.m000246
Entrez Gene	8268536

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]