PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27613.m000642 | ||||||||
Common Name | LOC8277582, RCOM_0047210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 60047.7 Da PI: 5.5842 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 457.6 | 7.8e-140 | 168 | 538 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l+e+L++cA+a++s+d+ +++l+++l++++s +g+p+qRl ay++e+L arla+s+s++y+al+++e + s+e l+++++++ev+P++kf+++ 27613.m000642 168 LKEVLYACAQAIDSNDMLTVEWLMTELRKMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYRALRCKEPA---SAELLSYMHILYEVCPYFKFGYM 260 5789*****************************************************************9...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN aI ea++ e+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++R+Tg+++++s + l +g+rL+++Ae+++vpfef++ + + +++e 27613.m000642 261 SANGAIAEAMKDESRVHIIDFQIAQGSQWITLIQALAARPGGPPHVRLTGIDDSTSAyaRGGGLDIVGQRLSRLAESCKVPFEFHA-AGVSGSEIE 355 *****************************************************998899999************************.8999***** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 l++L ++pgEala+n++l+lh+++desv ++++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr ++eri+vE 27613.m000642 356 LKNLGIRPGEALAINFALMLHHMPDESVGTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFVNRFTETLNYYLAIFESIDVTLPRGHKERINVE 451 ************************************************************************************************ PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++l+re+vn+vacegaer+erhe l+kW++r+ +aGF+p+pls+++++++k+ll+ ++++ y++ee++g+l+lgW++rpL++ +aWr 27613.m000642 452 QHCLAREVVNIVACEGAERIERHEPLGKWKSRFAMAGFTPYPLSSFVNATIKALLQSYSKK-YTLEERDGALYLGWMNRPLIASCAWR 538 ***********************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 70.105 | 142 | 519 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-137 | 168 | 538 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MQTSQKGTVM DGPPGFYDHP VRPRESYHWH SNQNLDQYPM SDDGSQEMHL SAETFDQHST 60 LESSSGTGGY PVQTSPSTAS FSPNESVISQ PNSQSYILDQ HDSSENTSGS PDREAYVIHK 120 LRELETAMLG PADDLDVYNI MTQDGSNQIT SEEEKWKFLM ETVSRRDLKE VLYACAQAID 180 SNDMLTVEWL MTELRKMVSV SGEPIQRLGA YMLEGLVARL ASSGSSIYRA LRCKEPASAE 240 LLSYMHILYE VCPYFKFGYM SANGAIAEAM KDESRVHIID FQIAQGSQWI TLIQALAARP 300 GGPPHVRLTG IDDSTSAYAR GGGLDIVGQR LSRLAESCKV PFEFHAAGVS GSEIELKNLG 360 IRPGEALAIN FALMLHHMPD ESVGTQNHRD RLLRLVKSLS PKVVTLVEQE SNTNTAPFVN 420 RFTETLNYYL AIFESIDVTL PRGHKERINV EQHCLAREVV NIVACEGAER IERHEPLGKW 480 KSRFAMAGFT PYPLSSFVNA TIKALLQSYS KKYTLEERDG ALYLGWMNRP LIASCAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-63 | 172 | 538 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27613.m000642 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002529051.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015580778.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_015580779.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | B9SST2 | 0.0 | B9SST2_RICCO; Chitin-inducible gibberellin-responsive protein, putative | ||||
STRING | XP_002529051.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Link Out ? help Back to Top | |
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Phytozome | 27613.m000642 |
Entrez Gene | 8277582 |
Publications ? help Back to Top | |||
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