PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27568.m000253 | ||||||||
Common Name | LOC8258390, RCOM_0039810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GRAS | ||||||||
Protein Properties | Length: 741aa MW: 83116.3 Da PI: 5.2383 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 403 | 3e-123 | 367 | 738 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL+ cA+av+++d ++++ lL++++++asp+gd mqR+a+ f+ +L+ar+a+s++++yka+ +++t+ +++l+a++lf ++P+ k+s++ 27568.m000253 367 LRTLLTLCAQAVAADDRRNTNDLLKQIRQNASPTGDGMQRMAHIFADGLEARMAGSGTQIYKAFMSRPTT---AADVLKAHHLFLAACPFRKLSNF 459 5789*****************************************************************9...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N++I++ +++++++HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfefn+ +a+++++++ 27568.m000253 460 FSNKTIMNIAQNATTLHIIDFGILYGFQWPCLIQRLSSRPGGPPKLRITGIDFPHPGfrPAERVEETGHRLSNYAKKFNVPFEFNA-IAQKWDTVQ 554 *******************************************************9999***************************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +e+L+++++E+l+Vn+ ++l +llde+v +es+r++vL+l+++++P+v++ + +n++ F +rf ea+ +ys+lfd+le+++pre er+ +E 27568.m000253 555 IEQLKIDKNEVLVVNCLYRLRNLLDETVVVESPRTNVLNLIREMNPDVFITGIVNGAYNAPFFITRFREAVFHYSTLFDMLETNVPREIPERMLIE 650 ************************************************************************************************ PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 re++g+e++nv+acegaer+er et+++W+ r+ +aGF+++pl++++++ ak ++ + + + ++e+s +l++gWk+r ++++S+W+ 27568.m000253 651 REIFGWEAKNVIACEGAERIERPETYKQWQVRILRAGFRQLPLNKEIYAAAKEKVNALYHKDFVIDEDSRWLLQGWKGRIVYALSSWE 738 ***********************************************************888*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.227 | 341 | 718 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-120 | 367 | 738 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MVMDQPLIGL YGSVSGLKLN DEILSVLSGQ ELDNGLQLDR DFVNQNYVKL PPYATPSFSV 60 SSSTASQDGD LHEDFDFSDV VLKYISDMLM EEDIEEKTCM FQESSAALQA AEKSLYELIG 120 EKYPPSINYD SAAHLVHNHR RSDENHDLNY VNCTSSSSST SGSNLVDPGL NSDLSEYKFS 180 RSVSQSASQS SNSSGYSIGT AADGLVDSPL STISEIFSDS ESILQFKKGF EEASKFLPNG 240 SLFIDLESTG LFLKDLREET KDVTTRAEEN HESEYSPDES RGKKNPHPDG LILEGRSNKQ 300 SAVYTETTVS SEDFDTVLLN CGESESALRV ALQNEKNKDV QQNGTKGSNS GKGRGKKQKG 360 KSNVVDLRTL LTLCAQAVAA DDRRNTNDLL KQIRQNASPT GDGMQRMAHI FADGLEARMA 420 GSGTQIYKAF MSRPTTAADV LKAHHLFLAA CPFRKLSNFF SNKTIMNIAQ NATTLHIIDF 480 GILYGFQWPC LIQRLSSRPG GPPKLRITGI DFPHPGFRPA ERVEETGHRL SNYAKKFNVP 540 FEFNAIAQKW DTVQIEQLKI DKNEVLVVNC LYRLRNLLDE TVVVESPRTN VLNLIREMNP 600 DVFITGIVNG AYNAPFFITR FREAVFHYST LFDMLETNVP REIPERMLIE REIFGWEAKN 660 VIACEGAERI ERPETYKQWQ VRILRAGFRQ LPLNKEIYAA AKEKVNALYH KDFVIDEDSR 720 WLLQGWKGRI VYALSSWEPD H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-54 | 374 | 739 | 26 | 380 | Protein SCARECROW |
5b3h_A | 4e-54 | 374 | 739 | 25 | 379 | Protein SCARECROW |
5b3h_D | 4e-54 | 374 | 739 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27568.m000253 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015582337.1 | 0.0 | scarecrow-like protein 14 isoform X1 | ||||
Refseq | XP_015582338.1 | 0.0 | scarecrow-like protein 14 isoform X1 | ||||
Refseq | XP_015582339.1 | 0.0 | scarecrow-like protein 14 isoform X1 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | B9SZZ9 | 0.0 | B9SZZ9_RICCO; Uncharacterized protein | ||||
STRING | XP_002531568.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 27568.m000253 |
Entrez Gene | 8258390 |
Publications ? help Back to Top | |||
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