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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
27529.m000047 |
Common Name | LOC8273265, RCOM_0031770 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family |
GRAS |
Protein Properties |
Length: 542aa MW: 61122.8 Da PI: 6.0347 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
27529.m000047 | genome | JCVI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 412.9 | 3e-126 | 173 | 542 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
++ L++cA+a+s+gd ++a al+ l++++s +g+p+qRl ay++e+L+ar+ s+s++y+al++++ ss+ ++++ ++++++P+ +f++
27529.m000047 173 RQILFACAQAISDGDISRAAALMHVLEQMVSVSGEPIQRLGAYMLEGLRARVELSGSKIYRALKCEAPV---SSDLMTYMGILFKICPYWRFAYTS 265
689****************************************************************98...99999999**************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
aN I eave e r+HiiDf+i qG+QW+ L+qaLa+Rp+gpp +RiTgv++p+s + l +g+rL++fAe+ +vpf+f+ +a + +++l
27529.m000047 266 ANVIIREAVEYEPRIHIIDFQIAQGTQWIYLMQALADRPGGPPAIRITGVDDPQSAyaRGGGLDIVGKRLSSFAESHNVPFQFHD-AAMSGCEVQL 360
******************************************************9999999************************.89999***** PP
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
e+L v+pgEa++Vn+ + lh+++desvs+ ++rd++L+lvkslsPkvv+++eqe+++n+++Fl rf e+leyy a+f+s++a+ +r++++ri+ E+
27529.m000047 361 EHLCVRPGEAVVVNFPYVLHHMPDESVSTWNHRDRLLRLVKSLSPKVVTLIEQESNTNTKPFLPRFKETLEYYNAMFESIDAGSSRDDKQRINAEQ 456
************************************************************************************************ PP
GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++++r+ivn++acega+r+erhe ++kWr+r+++aGF++ pls++++ ++ ll++++ + y ++e++g+l+l W++ ++ s SaWr
27529.m000047 457 HCVARDIVNMIACEGADRVERHEVFGKWRSRFMMAGFTQHPLSSQVTIAVRDLLKEYDRR-YGLQEKDGALYLWWMNTAMSSSSAWR 542
**********************************************************66.*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 542 aa
Download sequence Send
to blast |
MQTSQKHRNP AGIHGFYNHP QEIDQYGLSH IQILENSAFS DVGSQGTSVS FQTYKEEYFT 60 LESSSANAGF VGYDSPAASV SSNRSPFSPQ GSNSCLSDPH RSPDNTYGSP MSGVSSADDE 120 NALMRQKLRE LEFLLLGSES DITNCDFCFH HADQQARWDW TRMEEMIPRL DTRQILFACA 180 QAISDGDISR AAALMHVLEQ MVSVSGEPIQ RLGAYMLEGL RARVELSGSK IYRALKCEAP 240 VSSDLMTYMG ILFKICPYWR FAYTSANVII REAVEYEPRI HIIDFQIAQG TQWIYLMQAL 300 ADRPGGPPAI RITGVDDPQS AYARGGGLDI VGKRLSSFAE SHNVPFQFHD AAMSGCEVQL 360 EHLCVRPGEA VVVNFPYVLH HMPDESVSTW NHRDRLLRLV KSLSPKVVTL IEQESNTNTK 420 PFLPRFKETL EYYNAMFESI DAGSSRDDKQ RINAEQHCVA RDIVNMIACE GADRVERHEV 480 FGKWRSRFMM AGFTQHPLSS QVTIAVRDLL KEYDRRYGLQ EKDGALYLWW MNTAMSSSSA 540 WR
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |