PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 27506.m000051 | ||||||||
Common Name | LOC8277646, RCOM_0025300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 388aa MW: 42193.2 Da PI: 6.7159 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.8 | 4.4e-08 | 19 | 60 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r+C+ ++ + fC+ ++ +lC +C ++H H+ 27506.m000051 19 ARRCDSCKTAAAAVFCRADSAFLCLNCDAKIHAAnklvsrHE 60 689******99*********************6656666666 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 62 | 107 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ 27506.m000051 62 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 107 689*****************************66899999999986 PP | |||||||
3 | CCT | 69.6 | 7.9e-24 | 315 | 358 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ 27506.m000051 315 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 358 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.4E-13 | 17 | 64 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.509 | 17 | 64 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.33E-9 | 20 | 64 | No hit | No description |
Pfam | PF00643 | 5.3E-6 | 20 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.85 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-6 | 62 | 107 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.11E-9 | 63 | 107 | No hit | No description |
SMART | SM00336 | 3.1E-10 | 65 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.1E-18 | 315 | 357 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 315 | 357 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 388 aa Download sequence Send to blast |
MGIEMESLKS LTGGWTVAAR RCDSCKTAAA AVFCRADSAF LCLNCDAKIH AANKLVSRHE 60 RVWMCEVCEQ APAAVTCKAD AAALCVTCDA DIHSANPLAR RHERVPVEPF FDSAGSIVKS 120 SPFNFLVPTD HNGAGSAAFN HQQHEDDDVE GVSWLLPNPS STMINSKLGG IENHEMKSGH 180 GGGGGSGDLF FTEMDPFLDL EFHQNNNHSS AANDSVVPVQ ITKPAAASSI PVMNNDICYD 240 IDFCRTKLSS FNYPTQSLSQ SVSSSSLDVG VVPDGSSTSD ISYPFGRNMN TCTDPSGPIS 300 GNSTNQAAQM CGINREARVL RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTEI 360 DTDMDRLYNS PSSVSYLGDA QYGVVPTF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 27506.m000051 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533687.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 1e-124 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | B9T618 | 0.0 | B9T618_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002533687.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-116 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 27506.m000051 |
Entrez Gene | 8277646 |
Publications ? help Back to Top | |||
---|---|---|---|
|