PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27482.m000151
Common NameRCOM_0021080
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 527aa    MW: 58232 Da    PI: 6.8697
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27482.m000151genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.5e-16328379155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  27482.m000151 328 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 379
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.026233278IPR001471AP2/ERF domain
PRINTSPR003671.8E-6234245IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18328389IPR016177DNA-binding domain
PfamPF008472.5E-10328379IPR001471AP2/ERF domain
CDDcd000181.18E-11328389No hitNo description
SMARTSM003801.6E-31329393IPR001471AP2/ERF domain
PROSITE profilePS5103219.203329387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18329388IPR001471AP2/ERF domain
PRINTSPR003671.8E-6369389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0055114Biological Processoxidation-reduction process
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAPATTNWLS FSLSPMEMLR SSTESQFISY EGSSTATPSP HYFIDNFYAN GWGNPKEAQG  60
ATTMAAETSI LTSFIDPETH HQQVPKLEDF LGDSSSIVRY SDNSQTDTQD SSLTHIYDQG  120
SAAYFSEQQD LKAIAGFQAF STNSGSEVDD SASIARTHLG GEFMGHSIDS SGNDQLGGFS  180
NCTAANNALS LAVNNNNNNN GNQSATNSKT IAPVIESDCP KKIADTFGQR TSIYRGVTRH  240
RWTGRYEAHL WDNSCRREGQ ARKGRQGALF FLFSPSSSYH LSLFVACFFN YSSVTNYTKE  300
LDEMKYVSKQ EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF  360
ATEEEAAEAY DIAAIKFRGM NAVTNFEMSR YDVEAIMKSA LPIGGAAKRL KLSLESEQKP  420
NLNHEQQPQG SSSNSSSNNI SFASMPPVTA IPCGIPFENT TAQLYHHHHH HHHHQHHNLF  480
HHLQTTNNNL GGTTDISSGS TTSSMATTMS MLPQTAEFFL WPHHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap27482.m000151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844592e-39KJ784459.1 Salvia miltiorrhiza AP8/EREBP Transcription Factors (WRI8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583464.10.0LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLB9T5K40.0B9T5K4_RICCO; Protein BABY BOOM, putative
STRINGXP_002533523.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-161AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]