PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27446.m000475
Common NameLOC8283086, RCOM_0010830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 287aa    MW: 31286.1 Da    PI: 10.1252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27446.m000475genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-20154203356
            AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  27446.m000475 154 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 203
                    9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-29153210IPR001471AP2/ERF domain
PROSITE profilePS5103222.787153210IPR001471AP2/ERF domain
SMARTSM003802.1E-31153216IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21153210IPR016177DNA-binding domain
PRINTSPR003671.2E-10154165IPR001471AP2/ERF domain
CDDcd000186.89E-16154211No hitNo description
PfamPF008475.7E-14154202IPR001471AP2/ERF domain
PRINTSPR003671.2E-10176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTLSPVLQQH NAMNNQKFLS VPFFTSPDTF QFLPPDASSF FYKPLFTTNT HRHYPISSVL  60
AYNQLNQTNN NDHPVSIDIS AILAQSDINI KETESPPILD GIAAVVGEHV LFGTSADAPK  120
PQSQEPSISQ RTGSRKKDGE IHGGGRGVGG QRTYRGVRKR PWGRWSAEIR DRIGRCRHWL  180
GTFDTAEEAA RAYDAAARRL RGAKARTNFE IPSVVPISGS LNEVKKRNSK VSSSGRKCAV  240
VTSVAHLFSD TSCNISNNVE LDLKLGVGFG GNAEKNSPAS PPPSMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19144209471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap27446.m000475
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530445.10.0ethylene-responsive transcription factor ERF084
TrEMBLB9SWS60.0B9SWS6_RICCO; DNA binding protein, putative
STRINGXP_002530445.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.17e-22ERF family protein