PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27401.m000280 | ||||||||
Common Name | RCOM_0005850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 157aa MW: 17867.9 Da PI: 9.9127 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 86 | 140 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k 27401.m000280 86 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 140 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 99.7 | 2.7e-32 | 86 | 155 | 1 | 70 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray 70 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+Ek+ + k+++ 27401.m000280 86 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEKKTDGCKKKF 155 69***********************************************************999888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.1E-21 | 8 | 57 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 72 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-19 | 72 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 82 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-17 | 84 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.47E-15 | 86 | 143 | No hit | No description |
Pfam | PF00046 | 6.1E-17 | 86 | 140 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.7E-6 | 113 | 122 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.7E-6 | 122 | 138 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MRSFYPSTDP CRAETRSFLR GIDVNRLPAT ADCEEEAGVS SPNSTISSVS GKRSEREGIN 60 GEEHEHDMER ASSRGISDEE DGDTSRKKLR LSKDQSAILE ESFKEHNTLN PKQKLALAKQ 120 LGLRPRQVEV WFQNRRARTK LKQTEKKTDG CKKKFRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 90 | SRKKLRL |
2 | 134 | 142 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27401.m000280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015582260.1 | 3e-97 | homeobox-leucine zipper protein HAT4, partial | ||||
Swissprot | P46600 | 5e-57 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | B9SZP4 | 1e-111 | B9SZP4_RICCO; Homeobox protein, putative | ||||
STRING | XP_002531463.1 | 1e-112 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-47 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | 27401.m000280 |
Publications ? help Back to Top | |||
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