PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.L009100.1
Common NamePHAVU_L009100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 514aa    MW: 57322.1 Da    PI: 5.2062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.L009100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13318364354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h + E++RR+++N ++  Lr l+P++     +K + a+++  A++YI++L
  Phvul.L009100.1 318 TKHFATEKQRREQLNGKYKILRNLIPNP-----TKIDRASVVGDAIDYIREL 364
                      79**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-15313381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-11318364No hitNo description
PfamPF000103.7E-10318364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11318373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-10321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSTGDRAKMH EQTGCFDPNT MGESIPSLKD NFPQTLPDPL PPSPMVLGNT TNTDNGLEEN  60
LRLSVEELSF NHPNLQHQDV SIYASGVTST CIDIPHSQHL GLNMGNSYIN NTNNMDNHLV  120
QEVIDSLPYQ QSTWDPTTVQ ELQDIAYANQ IEQQQQQNEQ QFQQMETQNC SQSYNPSSIL  180
DPPYTSPDLL NLLHLPRCSA SSLHTNPTIC LTNPNQNTPN FQNPLAFLGD LPIGSDNTNA  240
SSVLYDPLFH LNLPPQPPAL RELFQSLPRG YSLPTNSRNG SLFGGDEIEG DGSQLDMGVL  300
EFNRVTPSVS KGRGGKATKH FATEKQRREQ LNGKYKILRN LIPNPTKIDR ASVVGDAIDY  360
IRELIRTVNE LKLLVEKKRY GRERCKRPKT EEDAAESCNI KPFGDPDGGI RTSWLQRKSK  420
DSEVDVRIID DDVTIKLFQR KKINCLLFVS KVLDELQLEL HHVAGGHVGE YCSFLFNSKI  480
IEGSSVYASA IANRVIDVLD CQYTASVPHT NSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.L009100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163873.10.0hypothetical protein PHAVU_L009100g
RefseqXP_007163874.10.0hypothetical protein PHAVU_L009100g
RefseqXP_007163875.10.0hypothetical protein PHAVU_L009100g
TrEMBLV7D2D80.0V7D2D8_PHAVU; Uncharacterized protein
STRINGXP_007163873.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.18e-79bHLH family protein