PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G212000.1
Common NamePHAVU_011G212000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 305aa    MW: 34486 Da    PI: 6.8538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G212000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-152269148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W+++Ede+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
  Phvul.011G212000.1 22 KGLWSPDEDEKLLRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 69
                        678*******************************************97 PP
2Myb_DNA-binding47.44.6e-1575119147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++++E++l+ +++  lG++ W+ Ia++++ gRt++++k++w++ 
  Phvul.011G212000.1  75 RGAFSPQEQDLIFHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 119
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-221772IPR009057Homeodomain-like
PROSITE profilePS5129416.6481769IPR017930Myb domain
SuperFamilySSF466894.21E-2820116IPR009057Homeodomain-like
SMARTSM007178.6E-122171IPR001005SANT/Myb domain
PfamPF002498.2E-142269IPR001005SANT/Myb domain
CDDcd001671.89E-102569No hitNo description
PROSITE profilePS5129424.28570124IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2573125IPR009057Homeodomain-like
SMARTSM007173.5E-1574122IPR001005SANT/Myb domain
PfamPF002496.5E-1475119IPR001005SANT/Myb domain
CDDcd001676.35E-1177120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRKPDLMANK DKKSDIKSKL RKGLWSPDED EKLLRYMLTN GQGCWSDIAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEQDLIFHLH SILGNRWSQI AARLPGRTDN EIKNFWNSTL  120
KKRMKTNTST GSLNNSTDSS ESKDVVSGIM PLNEHDIMNM CMDSSSCISS MQGMVLPDQF  180
DPFAMLVNNQ CDMTNNVSED FLNISCMTQI GMVEGHQGNY GTLEPNNKMG LGRDFSLPSL  240
ESRSIEIDVK SHNNNHFNYG CFNNTDKIKG SKVEDLIGFG NHGQGEFYLE NLMQDITSFP  300
LLEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28201265110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G212000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-106AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133825.10.0hypothetical protein PHAVU_011G212000g
SwissprotQ9C6U11e-72MYB83_ARATH; Transcription factor MYB83
TrEMBLV7AJW20.0V7AJW2_PHAVU; Uncharacterized protein
STRINGXP_007133825.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-74myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]