PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G206400.1
Common NamePHAVU_011G206400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SRS
Protein Properties Length: 329aa    MW: 35249.8 Da    PI: 7.7503
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G206400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702176.11.6e-541252866154
              DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssae 95 
                           CqdCGn+ak+dC+++RCRtCCk rgfdC+thvkstWvpa+ rr+  +  + a+ +   + +  askr r+  +sk+++a+s +++s+a+
  Phvul.011G206400.1 125 RVCQDCGNRAKRDCSYKRCRTCCKGRGFDCNTHVKSTWVPASLRRSGGNSGSDANGDGDGDGDGGASKRLRTIgSSKNAAATSLSSTSNAT 215
                         47********************************************988877777777777788888888888445555666667778887 PP

              DUF702  96 skkeletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         ++k+++  +            lP++v+++avfrc rvs++  ge+e+aY ++v+i+GhvfkG+Lyd+G+++
  Phvul.011G206400.1 216 PSKSFSLDTsscqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADA 286
                         77766655556999******************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.1E-53126285IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.4E-25126167IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.4E-22237283IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNMLGLRDLV FIAPTASQLH HHQHQHQHQH HHPISAEHHP NLPLPSPASL SVGLGIFPLL  60
TVPHTNDVHD QAQDCANNTT TNHNTNYWNL KMCGVSEVNS TRKGVEDEGR SNKHVMETEE  120
SGEFRVCQDC GNRAKRDCSY KRCRTCCKGR GFDCNTHVKS TWVPASLRRS GGNSGSDANG  180
DGDGDGDGGA SKRLRTIGSS KNAAATSLSS TSNATPSKSF SLDTSSCQQD AGFKQSLPRH  240
VRAPAVFRCH RVSAIGSGED EIAYLATVHI SGHVFKGFLY DHGADARNDV PSISELQLGN  300
NGSGKSNNNR ECSSAIGVPT TAYPASVC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G206400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133753.10.0hypothetical protein PHAVU_011G206400g
RefseqXP_007133754.10.0hypothetical protein PHAVU_011G206400g
RefseqXP_007133755.10.0hypothetical protein PHAVU_011G206400g
TrEMBLV7ALL90.0V7ALL9_PHAVU; Uncharacterized protein
STRINGXP_007133753.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.27e-42Lateral root primordium (LRP) protein-related