PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G180700.1
Common NamePHAVU_011G180700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 485aa    MW: 52859.5 Da    PI: 7.6008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G180700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-11130154226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+Gd+CkF H+
  Phvul.011G180700.1 130 GEKDCAHYMLTRTCKFGDSCKFDHP 154
                         7889********************9 PP
2zf-CCCH35.51.6e-11181207127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f++t  Ck+G++CkF+H++
  Phvul.011G180700.1 181 PGEPDCPYFLKTQRCKFGSKCKFNHPM 207
                         5789*********************95 PP
3zf-CCCH39.97.1e-13225249327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG Ck+G+ CkF+H++
  Phvul.011G180700.1 225 EPPCTFYMKTGKCKFGAACKFHHPK 249
                         79*********************96 PP
4zf-CCCH40.45e-13302325326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         ++ C+f+++tG CkyG++C+++H+
  Phvul.011G180700.1 302 EVDCPFYMKTGSCKYGATCRYNHP 325
                         689********************9 PP
5zf-CCCH39.41e-12388411326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C+f+++tG+Ck+G+rCk++H+
  Phvul.011G180700.1 388 QIECDFYMKTGECKFGERCKYHHP 411
                         568********************8 PP
6zf-CCCH40.74e-13439462427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         ++C+++++tGtCk+G++CkF H+p
  Phvul.011G180700.1 439 VICPYYLKTGTCKFGATCKFDHPP 462
                         68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.6E-4128155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244128156IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8130154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4134153IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971180208IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9182207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5185207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4186205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.305222250IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6222249IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10225249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6226250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5227248IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-7299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671299327IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10302325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5303326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4305324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413385413IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6385412IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6388413IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10389411IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5391411IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286435463IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8435462IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10439462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5439462IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6440460IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MENHIYSSYS PSTNYRFRDP DPSTMFLSHH HHRAADSASL RFSSSLADDI APPGVTSRVA  60
SSAAANYLSP WASSAATSSL DFKRSSEALY HPTILGTIGQ SEAWYSTNSL AKRPRYESAS  120
NMTIYPQRPG EKDCAHYMLT RTCKFGDSCK FDHPVWVPEG GIPDWKEVPN VVTSETPPER  180
PGEPDCPYFL KTQRCKFGSK CKFNHPMVSS ENEDISSGLP ERPSEPPCTF YMKTGKCKFG  240
AACKFHHPKD IQIQLSDEFS HTAAQTETSS MIGGAFGDIQ PIKSLISPSL QNSKGLPVRL  300
GEVDCPFYMK TGSCKYGATC RYNHPDRNAI NPPIAGLGAS ILPSSAASLN IGLLSPAVSV  360
YQAFDPRLSN PMSQVGIAES IYPQRPGQIE CDFYMKTGEC KFGERCKYHH PIDRSAPSLS  420
KQASVKLTPA GLPRREGAVI CPYYLKTGTC KFGATCKFDH PPPGEVVEMA KSQGTSADGG  480
EAED*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G180700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-125AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133464.10.0hypothetical protein PHAVU_011G180700g
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLV7AKQ80.0V7AKQ8_PHAVU; Uncharacterized protein
STRINGXP_007133464.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)