PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G158200.1
Common NamePHAVU_011G158200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HB-other
Protein Properties Length: 333aa    MW: 37763.2 Da    PI: 8.1341
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G158200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.81.4e-0682143655
                         S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox   6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 
                         +ft+ ++ e+e   ++  n  p +e  + LA+k            ++ +qV +WFqN+R+  
  Phvul.011G158200.1  82 RFTPAEVGEMEVILQEheNAMPAREILTALAEKFsespdrkgriTVQMKQVWNWFQNKRYAI 143
                         5888888888888886559999********************9999*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1073145IPR009057Homeodomain-like
SMARTSM003890.002776150IPR001356Homeobox domain
PROSITE profilePS500719.32982146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-782150IPR009057Homeodomain-like
CDDcd000860.0026282144No hitNo description
PfamPF167195.8E-38200315IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRISRDSYIY TSPTSYLSPA SAPLFLFFLL FANTNKGFNF QHPQNPSTLF SLPNTNFLSV  60
CFVFGFSLIM GRPPSNGGPA FRFTPAEVGE MEVILQEHEN AMPAREILTA LAEKFSESPD  120
RKGRITVQMK QVWNWFQNKR YAIRAKSSKT PGKLNITPMP RDDTTPVRTV PQQPAAAPIP  180
SASVAAVLPA VKATPDNPVM EFEAKSGRDG AWYDVSTFLS HRYLETNDPE VLVRFAGFGP  240
EEDEWINIRR HVRPRSLPCE SSECVVVIPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV  300
RGCRCRFLVR YDHDQSEVLI FLKILLWHTF YV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-392003174121SHH1 SAWADEE
4iur_B2e-392003174121SHH1 SAWADEE
4iut_A2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-392003174121SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G158200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133179.10.0hypothetical protein PHAVU_011G158200g
SwissprotQ8RWJ71e-122SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLV7AK160.0V7AK16_PHAVU; Uncharacterized protein
STRINGXP_007133179.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-106sequence-specific DNA binding transcription factors;sequence-specific DNA binding