PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G156900.1
Common NamePHAVU_011G156900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 382aa    MW: 41679.9 Da    PI: 6.7759
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G156900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-36411662104
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec..eaesssssasnss 86 
                         +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++    +  +a+++   ++++ +  +n+s
  Phvul.011G156900.1  41 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwnP--TATSMqpPQQQEIVLRDNKS 129
                         79**************************************************************87542..33223335555555555555 PP

                 TCP  87 sg......................kaaksaa.kskksqksa 104
                          +                      +    ++ ++++ ++++
  Phvul.011G156900.1 130 LSiedpiafgsrgesnvvsgatrvQ----EQfSHQQLESEN 166
                         5567777777766655544322211....111222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-3441166IPR005333Transcription factor, TCP
PROSITE profilePS5136933.27343101IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGESQNHLLL HQTATPSRST MRGGGVGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR  60
VRLAAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKAAIDE LAELPPWNPT ATSMQPPQQQ  120
EIVLRDNKSL SIEDPIAFGS RGESNVVSGA TRVQEQFSHQ QLESENANMS NSKYNSGPGF  180
LPPSLDTDNI AETIKTFFPV EATTTSFQSY PPPAPDLRQQ DLRLSLQSFQ DPIMLQQEPQ  240
SHHEPVLFAG ATLGFDGGSG WSEHQHHHSE EHRFLFGGNS GHGGGFVFNT PAPAFGQFFS  300
QRGPLQSSNT PSVRAWIDPS VDHHHHNHHY LSSLIHQGSV AGGFSAGGGF SGFRIPARIQ  360
GEEEHDGVSD KPSSASSDSR H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2048101154Putative transcription factor PCF6
5zkt_B2e-2048101154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G156900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133163.10.0hypothetical protein PHAVU_011G156900g
SwissprotQ9MAH81e-100TCP3_ARATH; Transcription factor TCP3
TrEMBLV7AHT80.0V7AHT8_PHAVU; Uncharacterized protein
STRINGXP_007133163.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-56TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]