PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G156900.1 | ||||||||
Common Name | PHAVU_011G156900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 382aa MW: 41679.9 Da PI: 6.7759 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.8 | 1.3e-36 | 41 | 166 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec..eaesssssasnss 86 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + +a+++ ++++ + +n+s Phvul.011G156900.1 41 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwnP--TATSMqpPQQQEIVLRDNKS 129 79**************************************************************87542..33223335555555555555 PP TCP 87 sg......................kaaksaa.kskksqksa 104 + + ++ ++++ ++++ Phvul.011G156900.1 130 LSiedpiafgsrgesnvvsgatrvQ----EQfSHQQLESEN 166 5567777777766655544322211....111222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.6E-34 | 41 | 166 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.273 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGESQNHLLL HQTATPSRST MRGGGVGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR 60 VRLAAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKAAIDE LAELPPWNPT ATSMQPPQQQ 120 EIVLRDNKSL SIEDPIAFGS RGESNVVSGA TRVQEQFSHQ QLESENANMS NSKYNSGPGF 180 LPPSLDTDNI AETIKTFFPV EATTTSFQSY PPPAPDLRQQ DLRLSLQSFQ DPIMLQQEPQ 240 SHHEPVLFAG ATLGFDGGSG WSEHQHHHSE EHRFLFGGNS GHGGGFVFNT PAPAFGQFFS 300 QRGPLQSSNT PSVRAWIDPS VDHHHHNHHY LSSLIHQGSV AGGFSAGGGF SGFRIPARIQ 360 GEEEHDGVSD KPSSASSDSR H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G156900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007133163.1 | 0.0 | hypothetical protein PHAVU_011G156900g | ||||
Swissprot | Q9MAH8 | 1e-100 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | V7AHT8 | 0.0 | V7AHT8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007133163.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-56 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G156900.1 |
Entrez Gene | 18616317 |
Publications ? help Back to Top | |||
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