PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G148000.1
Common NamePHAVU_011G148000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 357aa    MW: 39603.2 Da    PI: 7.3223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G148000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.66e-54171421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Phvul.011G148000.1  17 LPPGFRFHPTDEELVVHYLKKKVDSVPLPV-SIIADVDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 106
                         79****************************.89***************998999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s + ++vg+kk+Lvfy g+ pkg+ktdW+mheyrl
  Phvul.011G148000.1 107 ICS-GIQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRL 142
                         ***.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-658176IPR003441NAC domain
PROSITE profilePS5100560.95317176IPR003441NAC domain
PfamPF023653.4E-2818142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDSTEDSSTS SQHQPNLPPG FRFHPTDEEL VVHYLKKKVD SVPLPVSIIA DVDLYKFDPW  60
ELPAKASFGE EEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPICSG IQKVGVKKSL  120
VFYGGKPPKG VKTDWIMHEY RLAETKPNNR PPGCDLGHKK NSLRLDDWVL CRIYKKGNTQ  180
RSPMDHERDD SMDDMIGEVP PSINVGHMNA RFHLSKMSTN YSGALLENDR NTLEGVVIGN  240
GVNGISTTTS AMPSQFGTSN SKAVHLPFAL SNNTSASKRT LSTLYNWNDD SDEKHFNLDC  300
NGNVSVVRTE DNNATPGSFA TLLNQLPQTP SLPQIGSMGD GLLRTQYQIQ GTNWYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-72111789170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G148000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312150.0KT031215.1 Glycine max clone HN_CCL_7 NAC transcription factor (Glyma12g22790.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133059.10.0hypothetical protein PHAVU_011G148000g
SwissprotQ9LD441e-111NAC56_ARATH; NAC transcription factor 56
TrEMBLV7AJL60.0V7AJL6_PHAVU; Uncharacterized protein
STRINGXP_007133059.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-112NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]