PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G125300.1
Common NamePHAVU_011G125300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 363aa    MW: 41256.2 Da    PI: 8.1948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G125300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06122142526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ ++r G+C+ Gd C F+Hg
  Phvul.011G125300.1 122 VCPEYRR-GQCSSGDACEFSHG 142
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.3E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324118144IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-5122142IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287152176IPR000571Zinc finger, CCCH-type
SMARTSM003562.4152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSTICSEHKF QLQPSHQLLS LKKSLREIDI PPRKLLMRRA AADMFSDDTL LHKYLPNTKS  60
MDSDDSDDVG DPYASDEFRM FEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPRRFHYSG  120
TVCPEYRRGQ CSSGDACEFS HGVFECWLHP SRYRTEACKD GKNCKRKVCF FAHTPRQLRV  180
LPPQDSIKKK KCTNMSPHNH NHNNNNSNHC CLFCHCSSTC SPTSTLFGMS HFSPPLSPSS  240
SSSSPSRFEP SHRHGVVSYK DVFSELMCSM EGLNFGETSY VSASKPHSLS WLDVSEDNKQ  300
FNIHSPTIAT CGSFSNNENR RFLREGSRSF SINGNGRFSR EESGVVDDVI APDLAWVNDL  360
LM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G125300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132795.10.0hypothetical protein PHAVU_011G125300g
TrEMBLV7AGW30.0V7AGW3_PHAVU; Uncharacterized protein
STRINGXP_007132795.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-67C3H family protein