PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G120300.1
Common NamePHAVU_011G120300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 370aa    MW: 41006.1 Da    PI: 9.5536
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G120300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.91.1e-3182197289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec. 73 
                          g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +                  s    +e+ 
  Phvul.011G120300.1  82 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLpivpsvnnftlgypsavtS----NEAt 168
                         689*************************************************************7777777666655543220....2222 PP

                 TCP  74 eaesssssasnsssg.............k 89 
                         +++s+ ss++ns  +             +
  Phvul.011G120300.1 169 TPHSQPSSDQNSAWKlkrkeisgeiisiD 197
                         33333333332222233333445554440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-2884185IPR005333Transcription factor, TCP
PROSITE profilePS5136931.33784142IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVPWNRILTS IKWKDKTLHL ATNNEIHKIM IKSPKEADFP LKQEGSHSQT ISDPEKAKAS  60
SSSAAQWPRL KDPRIVRVSR AFGGKDRHSK VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG  120
LSQPSKVVDW LLNAAKHEID ELPPLPIVPS VNNFTLGYPS AVTSNEATTP HSQPSSDQNS  180
AWKLKRKEIS GEIISIDKAN WINRSEEDKQ GSNSEGPSTH VMPNNLLPRV NHPSFLGLLN  240
TMPHGYQWEP SAGDVSHQLA NNGFSNQTDI HSISVVPFPT STLSLSSGNS QILLCPPGAA  300
QSYFPSHFTE MDMDQRQINH YQMLSSGPQN PSSNSLNHSF SLAMMSHKPL HSPNCSKSPS  360
HKDQDFPSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1789143155Putative transcription factor PCF6
5zkt_B1e-1789143155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G120300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132732.10.0hypothetical protein PHAVU_011G120300g
TrEMBLV7AKT80.0V7AKT8_PHAVU; Uncharacterized protein
STRINGXP_007132732.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.22e-49plastid transcription factor 1