PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G115600.1

Common Name

PHAVU_011G115600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

VOZ

Protein Properties

Length: 451aa MW: 50163.1 Da PI: 5.6263

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G115600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	432.7	5.3e-133	206	422	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsafl+pkcalwdc+rpaqg+ew+q+ycss+h+ la neglpg+tp+lrp+gi++kdg+lfaa+ ak+qgkevgip+cegaa++kspwn Phvul.011G115600.1 206 PPPSAFLAPKCALWDCFRPAQGVEWCQNYCSSCHELLANNEGLPGMTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPWN 296 89*************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 a+e+fdls+lege++rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmke+gg+krsyymdpqp+s++ewhlyeyein+ d +al Phvul.011G115600.1 297 APEFFDLSFLEGEAVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLYEYEINNHDGCAL 387 *************************************************************************************** PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrlelklvd+kks+kgkv+k+sl+dlq+k+g+lta Phvul.011G115600.1 388 YRLELKLVDKKKSPKGKVTKESLNDLQNKMGQLTA 422 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MMRESSKGKC GSSSIQSMKE KEKHLVDKIQ GIFSNLQCAR KEGRGNDIVI FEEQMHQLLR 60 EWKAELESPA TSLADGSFDS FTSELAQLLQ VIEEKDDATS PLTKPGPLKT ELQTSNISDN 120 NFQFFQEKHF DGNQHLGHNF ESSASTLYNN AFSNTDMDLG HNTEIKHSES TQFSLEGFDC 180 SQIFGAGDTV QHGENIIPNI LPNICPPPSA FLAPKCALWD CFRPAQGVEW CQNYCSSCHE 240 LLANNEGLPG MTPILRPGGI GVKDGPLFAA VLAKTQGKEV GIPSCEGAAS TKSPWNAPEF 300 FDLSFLEGEA VREWLFFDKP RRAFESGNRK QRSLPDYSGR GWHESRKQVM KEHGGQKRSY 360 YMDPQPLSYL EWHLYEYEIN NHDGCALYRL ELKLVDKKKS PKGKVTKESL NDLQNKMGQL 420 TAAVLSSDDG VPPINGKTNA KSENDGSPEK *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MMRESSKGKC GSSSIQSMKE KEKHLVDKIQ GIFSNLQCAR KEGRGNDIVI FEEQMHQLLR  60
EWKAELESPA TSLADGSFDS FTSELAQLLQ VIEEKDDATS PLTKPGPLKT ELQTSNISDN  120
NFQFFQEKHF DGNQHLGHNF ESSASTLYNN AFSNTDMDLG HNTEIKHSES TQFSLEGFDC  180
SQIFGAGDTV QHGENIIPNI LPNICPPPSA FLAPKCALWD CFRPAQGVEW CQNYCSSCHE  240
LLANNEGLPG MTPILRPGGI GVKDGPLFAA VLAKTQGKEV GIPSCEGAAS TKSPWNAPEF  300
FDLSFLEGEA VREWLFFDKP RRAFESGNRK QRSLPDYSGR GWHESRKQVM KEHGGQKRSY  360
YMDPQPLSYL EWHLYEYEIN NHDGCALYRL ELKLVDKKKS PKGKVTKESL NDLQNKMGQL  420
TAAVLSSDDG VPPINGKTNA KSENDGSPEK *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G115600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007132681.1	0.0	hypothetical protein PHAVU_011G115600g
Swissprot	Q9SGQ0	1e-156	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	V7AHH0	0.0	V7AHH0_PHAVU; Uncharacterized protein
STRING	XP_007132681.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-150	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Phvul.011G115600.1
Entrez Gene	18615880

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]