PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G109700.1
Common NamePHAVU_011G109700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 325aa    MW: 36492.6 Da    PI: 5.4712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G109700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
  Phvul.011G109700.1 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                        799*******************************************97 PP
2Myb_DNA-binding56.94.6e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T++E+e +++  k+lG++ W++Ia++++ gRt++++k++w++ 
  Phvul.011G109700.1  67 RGNFTPQEEECIIRMLKKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.108961IPR017930Myb domain
SuperFamilySSF466892.71E-2911108IPR009057Homeodomain-like
SMARTSM007179.6E-111363IPR001005SANT/Myb domain
PfamPF002495.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-231568IPR009057Homeodomain-like
CDDcd001673.33E-91661No hitNo description
PROSITE profilePS5129426.74862116IPR017930Myb domain
SMARTSM007172.3E-1766114IPR001005SANT/Myb domain
PfamPF002493.3E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2569115IPR009057Homeodomain-like
CDDcd001676.09E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVRTPSWDKS GLRKGTWTPE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPNVKRGNF TPQEEECIIR MLKKLGNRWS AIAAELPGRT DNEIKNHWHT TLKKRSEINI  120
LPNEEARAFK SKNKESKQGR DSVPNNNGVT VTLPSNSWTS DNSSASVSPL SSSSGMFSST  180
SSDDCSAASM KNMVFEDDFR FLDSYIESMN ASFWTELNLG DVTYSAAGEI VSGDTSCAIK  240
STDASVRDSR AMSLHESTSE SIVVDNDSGS FPDAYAEATV ENFWMQPYVA DISHVPSELL  300
VPSVVESEYF TPIYDDLWGQ SHFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G109700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-165AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132612.10.0hypothetical protein PHAVU_011G109700g
TrEMBLV7AKG30.0V7AKG3_PHAVU; Uncharacterized protein
STRINGXP_007132612.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-57myb domain protein 14