PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G109600.1
Common NamePHAVU_011G109600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 324aa    MW: 36429.2 Da    PI: 4.9974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G109600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.8e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +lv +v+++G  +W+  ++  g+ R++k+c++rw +yl
  Phvul.011G109600.1 14 KGTWTPEEDMKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61
                        799*****************99************************97 PP
2Myb_DNA-binding58.51.5e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T++E+e +++  k++G++ W++Ia++++ gRt++++k++w++ 
  Phvul.011G109600.1  67 RGNFTPQEEECIIRMLKKHGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.521961IPR017930Myb domain
SuperFamilySSF466891.17E-2911108IPR009057Homeodomain-like
SMARTSM007173.0E-91363IPR001005SANT/Myb domain
PfamPF002491.4E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-231568IPR009057Homeodomain-like
CDDcd001678.87E-91661No hitNo description
PROSITE profilePS5129427.44762116IPR017930Myb domain
SMARTSM007174.1E-1866114IPR001005SANT/Myb domain
PfamPF002498.6E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2669115IPR009057Homeodomain-like
CDDcd001676.81E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVRTPSCDKS GLRKGTWTPE EDMKLVAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY  60
LRPNLKRGNF TPQEEECIIR MLKKHGNRWS AIAAELPGRT DNEIKNHWHT TLKKRSQQNT  120
VTDEEARASK SKNKESRAVR DSVPNKNGVT VSLPATSQIS DNSSGSFSPV SSSSSEFSSM  180
TSDHSNSASM ENLVLEDDFG FLDSYVNESF WKELNLDGVS YGAPCEVLSR DTNDSFQSTN  240
STQNVDSCAS SPHQSSSESM VMENDFGTFL DAYEEVTVDN FWSQPFVVDV SHVPSELLVP  300
SVEESEYFAP LYDDLWGQSH FVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121155107B-MYB
1mse_C1e-25121152104C-Myb DNA-Binding Domain
1msf_C1e-25121152104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G109600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150393e-68AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132611.10.0hypothetical protein PHAVU_011G109600g
SwissprotQ9LTC44e-58MYB15_ARATH; Transcription factor MYB15
TrEMBLV7AH710.0V7AH71_PHAVU; Uncharacterized protein
STRINGXP_007132611.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-57myb domain protein 14
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]