PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G109500.1
Common NamePHAVU_011G109500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 230aa    MW: 26577.2 Da    PI: 5.1556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G109500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd++lvd+++++G  +W++ ++  g+ R++k+c++rw++yl
  Phvul.011G109500.1 15 KGTWTPEEDQKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 62
                        799*****************99************************97 PP
2Myb_DNA-binding55.11.7e-1768112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ ++eE+e ++++++ lG++ W++Ia++++ gRt++++k++w++ 
  Phvul.011G109500.1  68 RGNYSEEEEETIIKLHRHLGNR-WSAIAARIP-GRTDNEIKNYWHTN 112
                         899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7721062IPR017930Myb domain
SuperFamilySSF466898.03E-2912109IPR009057Homeodomain-like
SMARTSM007172.5E-111464IPR001005SANT/Myb domain
PfamPF002496.3E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-231669IPR009057Homeodomain-like
CDDcd001673.06E-91762No hitNo description
PROSITE profilePS5129424.97663117IPR017930Myb domain
SMARTSM007179.1E-1767115IPR001005SANT/Myb domain
PfamPF002492.0E-1668112IPR001005SANT/Myb domain
CDDcd001671.97E-1170113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2470116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMVRTPSSDK NGLKKGTWTP EEDQKLVDYI TRYGHWNWRL LPKFAGLARC GKSCRLRWLN  60
YLRPNLKRGN YSEEEEETII KLHRHLGNRW SAIAARIPGR TDNEIKNYWH TNLKKRSEQD  120
SATDSQVSNS CEQSLTTTTE PSGNTFQSFN STQDYSPFSQ NSSSSITSTE CNTVTINENL  180
APQDEFAFWD ADTDLMTGNF WLESYMRDIS YVPNEPEYSF DAELWSHDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29131185109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G109500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-97AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132610.11e-172hypothetical protein PHAVU_011G109500g
SwissprotQ7XBH46e-60MYB4_ORYSJ; Transcription factor MYB4
TrEMBLV7AGB31e-171V7AGB3_PHAVU; Uncharacterized protein
STRINGXP_007132610.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-61myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]