PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G094300.1
Common NamePHAVU_011G094300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 395aa    MW: 43987.8 Da    PI: 8.3028
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G094300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.31.7e-3346100155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm++ gLtl+h+kSHLQkYRl
  Phvul.011G094300.1  46 KPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRL 100
                         79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.50843103IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-3144101IPR009057Homeodomain-like
SuperFamilySSF466896.45E-1645101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2346101IPR006447Myb domain, plants
PfamPF002491.7E-94899IPR001005SANT/Myb domain
PfamPF143791.5E-22150196IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYTHLQHQGK NIHSSSRMPI PSERHMFLHT GNGSGDSGLV LSTDAKPRLK WTPDLHARFI  60
EAVQQLGGAD KATPKTVMKL MGISGLTLYH LKSHLQKYRL SKSLHGQSNN ATHKICINPG  120
AATDERLREN NGTHVNNLNL APQSNNKDLH ISEALQMQIE VQRRLNEQLE VQRLLQLRIE  180
AQGKYLQAVL EKAQETLGRQ NLGVVGLEAA KLQLSDLVSK VSSQCLNSAF LEMKELQGFS  240
PHQTQTNQPN DCSMDSCLTS CEVSQKEQEI QNGGMSLRPF NVHTFMERKE VIEGPNLNNL  300
PNTDLKWCDP VKNTFLTPLS RRSPSNLSMS IGLEGETENG STIRKESVKP VAEKVSQDYG  360
LPSFFAAPKL DLTTEDKNTR KSCKELDLNG FSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-2045102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G094300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132437.10.0hypothetical protein PHAVU_011G094300g
SwissprotQ9SQQ91e-133PHL9_ARATH; Myb-related protein 2
TrEMBLV7AJZ40.0V7AJZ4_PHAVU; Uncharacterized protein
STRINGXP_007132437.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-122G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]