PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G080100.1
Common NamePHAVU_011G080100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 697aa    MW: 76365.5 Da    PI: 8.6922
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G080100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.95.2e-25105206199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF  
  Phvul.011G080100.1 105 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL- 192
                         89****************************986445444..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          +++++el+v+++r+
  Phvul.011G080100.1 193 -RSENGELCVGIRRA 206
                         .458999******97 PP
2Auxin_resp115.45.1e-38275358183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a++ a+ +++Fe+vY+Prast+eF++k+++v++a++++++ GmRfkmafeted+s++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  Phvul.011G080100.1 275 AVTLAAGNKPFEIVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWfMGTIASVQVLDPIRWPNSPWRLLQ 358
                         57788999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-3895208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-29100206IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-22104205No hitNo description
PROSITE profilePS5086313.578105207IPR003340B3 DNA binding domain
PfamPF023625.8E-23105206IPR003340B3 DNA binding domain
SMARTSM010192.8E-23105207IPR003340B3 DNA binding domain
PfamPF065072.3E-32275358IPR010525Auxin response factor
PROSITE profilePS5174515.051584664IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MKEGEKVLDP QLWHACAGGM VQMPKVNSKV FYFPQGHAEH AHTNIDLRVP PHILCNVEAV  60
KFMADPETDE VFAKLSLVPL RNSELGPDSE GGADAAEASE KPASFAKTLT QSDANNGGGF  120
SVPRYCAETI FPRLDYSAEP PVQTVVAKDV QGETWRFRHI YRGTPRRHLL TTGWSSFVNQ  180
KKLVAGDSVV FLRSENGELC VGIRRAKKGI GCEVWNSASG SGSGSVGGSG NCGIGPYGPF  240
SFFLREESKS LRNGGGGGGN LSGRAKVRPE AVVEAVTLAA GNKPFEIVYY PRASTPEFCI  300
KASSVRAAMR IQWCSGMRFK MAFETEDASR ISWFMGTIAS VQVLDPIRWP NSPWRLLQVT  360
WDEPDLLQNV KRVSPWLVEL VSNLPVINFT PFSPPRKKLR FPQHPEFPLD VQFPIPTFSG  420
NHLGPNHPLC GFSDNPPAGI QGARHAQIGS SLSDLHLNKK LQLGLLPSNI HQLGVYSGIS  480
NGNTTTNHDK SKESLSHLLS MGKSSNSLEK PDDVKKHQFL LFGQPILTEQ QISRDVLSRG  540
KKSPDDVKDK EKCVLGDSQS ALSRQFSSGK ASAAELSWQL GLDTGHCKVF LESEDVGRTL  600
DLSRLGSYEE LYRRLSYMFG VERSEILNYV FYYDAKGAVK QTGDEPFSDF MKTAKRLTIL  660
TDSGSKNVKR AFITGTRNGE HGLDASNKTG PLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-81737950388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G080100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132265.10.0hypothetical protein PHAVU_011G080100g
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV7AFF70.0V7AFF7_PHAVU; Auxin response factor
STRINGXP_007132265.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]