PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G073600.2
Common NamePHAVU_011G073600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 792aa    MW: 87823.8 Da    PI: 6.4368
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G073600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24164265199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   
  Phvul.011G073600.2 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL-- 251
                         99****************************963.3445679************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + +++el+++++r+
  Phvul.011G073600.2 252 RGENGELRLGIRRA 265
                         4499999****996 PP
2Auxin_resp112.25e-37290372182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                         +a+a+stks F+v+Y+Pras+++Fvv+++k++k++k+++s G+Rfkm++e+++s+err+ sGt +++sdldp+rWp+SkWr+L
  Phvul.011G073600.2 290 VANAVSTKSKFHVFYSPRASHADFVVPYQKYVKSIKSPLSTGTRFKMRLEMDESQERRCnSGTLIATSDLDPYRWPKSKWRCL 372
                         689*******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-41155277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-44156275IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-23162264No hitNo description
SMARTSM010191.5E-24164266IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084164266IPR003340B3 DNA binding domain
PfamPF023624.8E-22164265IPR003340B3 DNA binding domain
PfamPF065071.7E-31290372IPR010525Auxin response factor
PfamPF023094.8E-7654747IPR033389AUX/IAA domain
PROSITE profilePS5174521.836663745IPR000270PB1 domain
SuperFamilySSF542772.16E-10666742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MEFDLNHEVT EVEKNAFCDR ECEKDAGVSC WSSSTSSSSS SSSARVSSSY LELWHACAGP  60
LTSLPKKGNV VVYFPQGHLE QVASFSPFTP MEIPSYDLQP QIFCRVVNVQ LLANKENDEV  120
YTQVTLLPQA ELEGMNSEGK ELEEFGAEEE GDERSPTKST PHMFCKTLTA SDTSTHGGFS  180
VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK  240
NLVSGDAVLF LRGENGELRL GIRRAVRPRN DLPESVIGSQ NCYPNVLSSV ANAVSTKSKF  300
HVFYSPRASH ADFVVPYQKY VKSIKSPLST GTRFKMRLEM DESQERRCNS GTLIATSDLD  360
PYRWPKSKWR CLMVRWDEDF ESNHQDRVSP WEIDPSAPLP PLSIQSSPRL KKLRTGLQVA  420
SPSHHITARG SGLVGFDESV RSPKVLQGQE NTGFVSLYYG CDTVTKPLGF EMSTPSHPNL  480
GSAEVRKVTS SELSSVHPFS YAGFVETNRF PRVLQGQEIC PLKSLTGKVD LNLGAWGMPN  540
LGFNLHQATK PNFQPTLFPY GDIHQAGQAS LFCSKSTTFQ RENVPFNKPS TQAGIIVNEV  600
GRPELPNEHK LQDNLSAAAS LGAANMGVPN DNNVQGKVNA CKLFGFSLSG ETTAQNLQNS  660
AKRSCTKVHK QGSLVGRAID LSRLSSYNDL LSELERLFGM EGLLKDPDKG WRILYTDSEN  720
DIMVVGDDPW HEFCDVVCKI HIYTQEEVEK MTIGMISDDT HSCLEEAPII TEASKSSSVG  780
QPDYSPTAVR V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1195239522354Auxin response factor 1
4ldw_A1e-1195239522354Auxin response factor 1
4ldw_B1e-1195239522354Auxin response factor 1
4ldx_A1e-1195239522354Auxin response factor 1
4ldx_B1e-1195239522354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G073600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132190.10.0hypothetical protein PHAVU_011G073600g
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLV7AF920.0V7AF92_PHAVU; Auxin response factor
STRINGXP_007132189.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]