PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G066800.1 | ||||||||
Common Name | PHAVU_011G066800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 140aa MW: 15590.2 Da PI: 10.2284 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k F++ L H +H Phvul.011G066800.1 26 FKCKTCDKQFPSFQALGGHRASH 48 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.05 | 26 | 48 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.81E-8 | 26 | 90 | No hit | No description |
PROSITE profile | PS50157 | 9.972 | 26 | 53 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.0E-12 | 26 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.5E-9 | 68 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.6 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MSKCLMLVEE VGEGASRERV VKSGEFKCKT CDKQFPSFQA LGGHRASHKK LKRMASNLPC 60 SVVTPKLHQC SICGLVFGIG QALGGHMRKH RVSSIHHHHQ DLPKSSATKN LRFCFDLNLT 120 PYENHLNLNL RTPVSHLFM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G066800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132100.1 | 2e-99 | hypothetical protein PHAVU_011G066800g | ||||
TrEMBL | V7AEX5 | 5e-98 | V7AEX5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132100.1 | 8e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-31 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G066800.1 |
Entrez Gene | 18615375 |