PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G063300.1
Common NamePHAVU_011G063300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 747aa    MW: 84535.9 Da    PI: 6.0931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G063300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.96.7e-1133727421373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl cA+avss+d   a++lL++++++ sp gd +qRla++f++AL+arla++++++y al+ ++ts    ++ ++a++++  ++P+ 
  Phvul.011G063300.1 372 LRTLLLLCAQAVSSDDRVSANELLKQIRQHTSPLGDGTQRLAHCFANALEARLAGTGTQIYTALSHKRTS---AADMVKAYQMYISACPFK 459
                         5789************************************************************999999...99**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s + aN++Il+ + + e +HiiDf+i +G+QWpaL+  L++R +gpp+lRiTg++ p++g   +e++++tg rLa+++++++vpfefn+
  Phvul.011G063300.1 460 KLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRLGGPPKLRITGIELPQPGfrPAERVQQTGLRLARYCDRFKVPFEFNA 550
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a+++e++++e+L++k++E laVn++++ ++llde+  l+s+rd+vL+l+++ +P+++++   + ++n++ F+ rf eal +ys+lfd l
  Phvul.011G063300.1 551 -IAQKWETIKIEDLKIKENELLAVNSMFRFQNLLDETIVLNSPRDAVLNLIRKANPTIFIHGTVNGSYNAPFFVPRFREALFHYSTLFDVL 640
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++++re+  r + E+e++gr+++n++aceg er+er e +++W+ r ++aGF+++pl+++  ++ ++ l+ v+   +++ e+ + +++gW
  Phvul.011G063300.1 641 DTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPEIYKQWQVRNMRAGFRQLPLDKHLINKLRYKLKDVYHSDFMLLEDANFMLQGW 731
                         **************************************************************************777************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r +++ S+W
  Phvul.011G063300.1 732 KGRVVYASSCW 742
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.102346723IPR005202Transcription factor GRAS
PfamPF035142.3E-110372742IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MDPRFKSNFI NGFEPNQVPN TVVVEDQFLV PVNGMMRSFE FGFRDNPLVL PPDPNVAQNH  60
VSFATDEESP LDEIDFSVTV LRYINQMLME EDLEEKSCMF HDSLALQAAE KSFYEVIGET  120
HPSSIKTYHD VDSPEDSSFS DYGSGGTATS TGNSIESHGN NVDLTDYKPS IPQTTFPTDF  180
VFQASSIHSY MNTTRNFGVT DSGFLASSTA AGFLDPTLFS KSESVLQFER GVEEANKFLP  240
KGNPLVIDLD NPSFRKVPPL QEETKVERDE IYAESRGRKN HEREDEEADL HDGRSNKQSA  300
VYIDDSEISE LLDKVLLGTR CRNDPAPLCI CYADLSNGAS LCAQKKLEET NKSGGGKSRV  360
KKQGNKKEVV DLRTLLLLCA QAVSSDDRVS ANELLKQIRQ HTSPLGDGTQ RLAHCFANAL  420
EARLAGTGTQ IYTALSHKRT SAADMVKAYQ MYISACPFKK LSIIFANHTI LQLAMEVESL  480
HIIDFGIRYG FQWPALIYRL SKRLGGPPKL RITGIELPQP GFRPAERVQQ TGLRLARYCD  540
RFKVPFEFNA IAQKWETIKI EDLKIKENEL LAVNSMFRFQ NLLDETIVLN SPRDAVLNLI  600
RKANPTIFIH GTVNGSYNAP FFVPRFREAL FHYSTLFDVL DTNVSREDPM RLMFEKEFFG  660
RRVMNALACE GCERVERPEI YKQWQVRNMR AGFRQLPLDK HLINKLRYKL KDVYHSDFML  720
LEDANFMLQG WKGRVVYASS CWVPAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-513557441379Protein SCARECROW
5b3h_D8e-513557441379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G063300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132057.10.0hypothetical protein PHAVU_011G063300g
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV7AIW70.0V7AIW7_PHAVU; Uncharacterized protein
STRINGXP_007132057.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]