PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G063200.1
Common NamePHAVU_011G063200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 687aa    MW: 77758.9 Da    PI: 5.3811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G063200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.52.5e-1173096831373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl c + v ++d++ a++lL+++++++sp gd+ qRla+yf++AL+arl++ ++    + +  ++++ + +e l+a+++f  +sP+ 
  Phvul.011G063200.1 309 LRNLLLMCSQSVYANDNRTANELLKQIRQHSSPFGDASQRLAHYFANALEARLVGDGTVAQGTYSFLTSKRFSAAEFLKAYQVFLSASPFK 399
                         6899**************************************************96665555556666665669***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN++I++a++++e++HiiDf+i +G++Wp L++ L++R++gpp+lRiTg++ p++g   +e++eetg+rLa+++++ +vpfe+n+
  Phvul.011G063200.1 400 KFTYFFANKMIMKAAAKAETIHIIDFGILYGFHWPILIKFLSNREGGPPKLRITGIEFPQPGfrPTERIEETGSRLANYCKRYNVPFEYNA 490
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++++++e++++e+L+++++E +aVn++++ ++lldes +++s+r++vL+l+++++P++++++  + ++n++ F++rf eal +ysa++d+ 
  Phvul.011G063200.1 491 IASRNWETIQVEALKIQSNELVAVNCHMRFENLLDESIEVNSPRNAVLQLIRKINPDIFTHSITNGSYNAPFFATRFREALFHYSAIYDMC 581
                         9999*************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ +pre+e+r ++Erellgre++nv+aceg+er er et+++W++r ++aGFk++pl+++ +++ ++ l++ + + +  +e+++++++gW
  Phvul.011G063200.1 582 DTVIPRENEWRLMIERELLGREAMNVIACEGSERLERPETYKQWQARNTRAGFKQLPLNKELMAKFRTKLKEWYHRDFVFDEDNNWMLQGW 672
                         **************************************************************************999************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r L++ ++W
  Phvul.011G063200.1 673 KGRILYASTCW 683
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.091283664IPR005202Transcription factor GRAS
PfamPF035148.5E-115309683IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MEHPNFFGED EGIAHLTDSL AFPTMDPSSR DPSLEDNDFS ETAKFISQIL MEENVEHKPF  60
YDSLTLQVTE KSFYDALAGN LLPSSNQHPL AFSPEAETTT TTTTASSSSS SNNSNNNFSD  120
ENSGELKLPS PDSVFKFNSR PLSQPSPSIT ANHGLQDLDF SIAKLLSQNI FNDVDSVSQF  180
RRGLEEASKF LPPGPNLVTG LDSNGEQGFN KFGETSYGLR SGKNHKRDER YAIEEEEEEE  240
EEGRSNKQSA LSHADESDLS DAFDRVLLHE GNMCSEISSL PGGAVKVDEP DGGKSRSRKP  300
GRNKETVDLR NLLLMCSQSV YANDNRTANE LLKQIRQHSS PFGDASQRLA HYFANALEAR  360
LVGDGTVAQG TYSFLTSKRF SAAEFLKAYQ VFLSASPFKK FTYFFANKMI MKAAAKAETI  420
HIIDFGILYG FHWPILIKFL SNREGGPPKL RITGIEFPQP GFRPTERIEE TGSRLANYCK  480
RYNVPFEYNA IASRNWETIQ VEALKIQSNE LVAVNCHMRF ENLLDESIEV NSPRNAVLQL  540
IRKINPDIFT HSITNGSYNA PFFATRFREA LFHYSAIYDM CDTVIPRENE WRLMIERELL  600
GREAMNVIAC EGSERLERPE TYKQWQARNT RAGFKQLPLN KELMAKFRTK LKEWYHRDFV  660
FDEDNNWMLQ GWKGRILYAS TCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-532926851379Protein SCARECROW
5b3h_D1e-532926851379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G063200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132056.10.0hypothetical protein PHAVU_011G063200g
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV7AFK40.0V7AFK4_PHAVU; Uncharacterized protein
STRINGXP_007132056.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]