PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G059800.1
Common NamePHAVU_011G059800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 328aa    MW: 36685.8 Da    PI: 5.2191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G059800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86.1e-142067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Phvul.011G059800.1 20 KGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 67
                        678*******************************************97 PP
2Myb_DNA-binding538.1e-1773116146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++
  Phvul.011G059800.1  73 RGAFSPQEEELIVHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.141567IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-221770IPR009057Homeodomain-like
SuperFamilySSF466891.64E-2718114IPR009057Homeodomain-like
SMARTSM007172.4E-91969IPR001005SANT/Myb domain
PfamPF002491.2E-122067IPR001005SANT/Myb domain
CDDcd001673.53E-82367No hitNo description
PROSITE profilePS5129425.75468122IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2671123IPR009057Homeodomain-like
SMARTSM007178.4E-1672120IPR001005SANT/Myb domain
PfamPF002492.6E-1573116IPR001005SANT/Myb domain
CDDcd001671.51E-1175115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRKPEVSGKN NSNINYKLRK GLWSPEEDDK LMNYMLNSGQ GCWSDVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAFSPQE EELIVHLHSL LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKNLSSNTS PNGSESSYDP NKDLNMAGFT TSNTHQDQLA DFMPMLNSSS PSPSMHATVL  180
NSIIDRLPLL DHGQNMPVSG GFFNGTEPYF SSQSGVDHKG FYLENGGVFG SVNIGAEGDM  240
YVPPLESVST TSDHNLKVES TCNTDTNNSY FDDINSVILN NCSNKRTENR AGVENLFQEE  300
LTMGEWDLEE LMKDVSSFPF LDFSNIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271412221128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G059800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132019.10.0hypothetical protein PHAVU_011G059800g
SwissprotQ9C6U13e-75MYB83_ARATH; Transcription factor MYB83
TrEMBLV7AGN00.0V7AGN0_PHAVU; Uncharacterized protein
STRINGXP_007132019.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-74myb domain protein 46
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]