PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G050600.1 | ||||||||
Common Name | PHAVU_011G050600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | B3 | ||||||||
Protein Properties | Length: 431aa MW: 48952.9 Da PI: 8.8356 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.7 | 8e-17 | 6 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k l+ps + ++l+lp +f++++g + s +tl ++g +W+v l +k +++y++ +GW+eF + + +g +vF+++g+s+f + Phvul.011G050600.1 6 FHKLLLPSTL-QPNQLRLPDDFMRKYGRE--LSPIVTLSVPDGSVWRVGL--KKADNKYWFLDGWQEFIQHYSIGVGYLLVFRYEGKSSF--N 91 5566655555.5566***********854..7779***************..*********************************99999..7 PP EEEE CS B3 94 vkvf 97 v+vf Phvul.011G050600.1 92 VHVF 95 7777 PP | |||||||
2 | B3 | 56.4 | 5.4e-18 | 299 | 389 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l + +e l Phvul.011G050600.1 299 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQ 384 78899******************877743...59**************665555..66***********************9988888899 PP EEEE- CS B3 94 vkvfr 98 v++fr Phvul.011G050600.1 385 VSIFR 389 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.04E-24 | 2 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-24 | 2 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-18 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.296 | 5 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-14 | 6 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-17 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-24 | 288 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-24 | 289 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.29E-22 | 294 | 389 | No hit | No description |
PROSITE profile | PS50863 | 13.803 | 296 | 391 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-16 | 296 | 391 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-16 | 299 | 389 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MTHPSFHKLL LPSTLQPNQL RLPDDFMRKY GRELSPIVTL SVPDGSVWRV GLKKADNKYW 60 FLDGWQEFIQ HYSIGVGYLL VFRYEGKSSF NVHVFNLATS EINYQSAMRC SNEGPHFANL 120 LKFFEEMDDE DSIEILDSSP SHLAPSSLQN KVLAGSVDKM SPAKCYTPPA LQNLFNGSKL 180 NSINWGEGGD AHCSKSVNSL DNLLTRDIGV QFNAVEFKKS TEELKLRASM EERMKKTARK 240 KRKSEGQEAS AEQEEEVEMR FRFYESASAR KRTVTAEERE RAINAAKAFE PPNPFCRVVL 300 RPSYLYRGCI MYLPSCFAEK HLNGVSGFIK LQISNGRQWP VRCLYRGGRA KLSQGWFEFS 360 LENNLGEGDV CVFELLRMKE VVLQVSIFRI TEDVGLLSPP PLQQNQKMSS AKLLNTPLQQ 420 HLTSTKIIRN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-72 | 262 | 394 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-72 | 262 | 394 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G050600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007131905.1 | 0.0 | hypothetical protein PHAVU_011G050600g | ||||
Swissprot | Q8L3W1 | 1e-131 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | V7AEE9 | 0.0 | V7AEE9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007131905.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-120 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G050600.1 |
Entrez Gene | 18615209 |
Publications ? help Back to Top | |||
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