PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G041200.1

Common Name

PHAVU_011G041200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

SRS

Protein Properties

Length: 212aa MW: 23763.7 Da PI: 8.4102

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G041200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	94.6	2.1e-29	14	75	4	65
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa 65 ++++C++CGnqakkdCa++RCRtCCk++gf+C+th++stW+p+++rr++ +++ +++ ++ Phvul.011G041200.1 14 KGSKCEECGNQAKKDCAYSRCRTCCKNKGFKCQTHIRSTWIPVDRRRHKVEHQPLTTNLQQG 75 6789********************************************98887766554433 PP
2	DUF702	70.7	4.5e-22	85	142	96	154
DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++l ++P+ ss+a f+cv+v+s+dd +e+aYqt+v+igGhvf+G+LydqG+e+ Phvul.011G041200.1 85 PYSSL-EFKFPAVTSSMASFSCVQVRSMDDTVNETAYQTSVNIGGHVFSGFLYDQGPEQ 142 22233.334************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-42	15	141	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-24	17	59	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.7E-19	92	140	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSTMQEQGLE TVVKGSKCEE CGNQAKKDCA YSRCRTCCKN KGFKCQTHIR STWIPVDRRR 60 HKVEHQPLTT NLQQGDIPKR HKHNPYSSLE FKFPAVTSSM ASFSCVQVRS MDDTVNETAY 120 QTSVNIGGHV FSGFLYDQGP EQSFNAKGDN PFDQQHDLNL RSVSLHTRDG ASATMPPLSL 180 TASQEPFFIP HHSFPLASFR PDLTYLSHPK P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G041200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007131783.1	1e-160	hypothetical protein PHAVU_011G041200g
Swissprot	Q9SJT8	3e-43	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	V7ADZ4	1e-158	V7ADZ4_PHAVU; Uncharacterized protein
STRING	XP_007131783.1	1e-159	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-45	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Phvul.011G041200.1
Entrez Gene	18615113