PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G038900.1
Common NamePHAVU_011G038900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 215aa    MW: 24075.3 Da    PI: 6.3852
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G038900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.3e-07433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  ++lfC  ++  lC  C +++H
  Phvul.011G038900.1  4 LCDVCESAAAILFCAADEAALCFACDQKIH 33
                        7***************************99 PP
2zf-B_box20.69.3e-075395338
            zf-B_box  3 erkCpeHeeke...lqlfCedCqqllCedClleeHkg....Ht 38
                         ++C+ +e+ +   + ++Ce +++ lC +C +  H g    H+
  Phvul.011G038900.1 53 VPRCDICENAPgteAFFYCEIDGSSLCLQCDMIVHVGgkrtHE 95
                        679999996555559*****************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.7E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
CDDcd000212.18E-5333No hitNo description
PfamPF006432.2E-5334IPR000315B-box-type zinc finger
SMARTSM003366.2E-85199IPR000315B-box-type zinc finger
PROSITE profilePS501198.8025499IPR000315B-box-type zinc finger
CDDcd000212.95E-55496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCFACDQ KIHMCNKLAS RHIRVGLADP TDVPRCDICE  60
NAPGTEAFFY CEIDGSSLCL QCDMIVHVGG KRTHERYLLL RQRAEFPGDK PAQMEELGLQ  120
PLDQNEFRRD EGQSLKLKTR DSQQNHSILP VPRQENNIDG HRKMDKKLID LNTRPLRLNG  180
PTPNNQGMDI LRGNNHEFAS VPPVESYKQG AEKQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G038900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922060.0BT092206.1 Soybean clone JCVI-FLGm-10I4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131751.11e-159hypothetical protein PHAVU_011G038900g
SwissprotC0SVM55e-77BBX19_ARATH; B-box zinc finger protein 19
TrEMBLV7AES11e-158V7AES1_PHAVU; Uncharacterized protein
STRINGXP_007131751.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-79DBB family protein