PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G024100.1
Common NamePHAVU_011G024100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 456aa    MW: 51367.2 Da    PI: 6.3003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G024100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.91.6e-140284521374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+le+a+++L+++s laspdgd+mqR+aayf+e La r++++++++ +al++++ +    see+ ++klf+e++P+l
  Phvul.011G024100.1  28 LIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRVT--MLSEEILVQKLFFELFPFL 116
                         689*************************************************************999887..69***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k++++++NqaI ea+ege+ +H+iD+++ + +QW+aLlq L++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+fn+ v
  Phvul.011G024100.1 117 KVAYVLTNQAIIEAMEGEKVIHVIDLNAAEAAQWIALLQVLSARPEGPPHLRITGIHQ----KKEILDQVAHRLTEEAEKLDIPFQFNP-V 202
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................................... 214
                         +++le+l++++Lrvk+gEala++++lqlh+ll                                                           
  Phvul.011G024100.1 203 VSKLENLDFDKLRVKTGEALAISSILQLHSLLawddealkrksprllkgssgihlqrvlplsqstlgdmlekdmvngytaspdstssspas 293
                         99************************************************************************************99875 PP

                GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                            ++s+    + +++L+++++lsPkv+vv+eq+++hn++++++r+leal+ y+alfd+le++++r+s er  vE++++g+ei+n++aceg
  Phvul.011G024100.1 294 lttSNSM----NMESFLSALWGLSPKVMVVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEG 380
                         5322222....5578**************************************************************************** PP

                GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +er+erhe+lekW +r+++aGF++vpls++ + qa++ ++ ++ +gyr+ +e+g+++++W+drp++s+SaWr
  Phvul.011G024100.1 381 TERKERHEKLEKWFQRFDQAGFGNVPLSYYGMLQARRFIQSYGCEGYRMRDENGCVLICWQDRPMFSISAWR 452
                         ***********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.2612432IPR005202Transcription factor GRAS
PfamPF035145.4E-13828452IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMSLSPSLGS PNNLLLREMK SEERGLYLIH LLLTCANHVA AGNLENANTT LEQISLLASP  60
DGDTMQRIAA YFMESLADRI LKTWPGIHRA LNSTRVTMLS EEILVQKLFF ELFPFLKVAY  120
VLTNQAIIEA MEGEKVIHVI DLNAAEAAQW IALLQVLSAR PEGPPHLRIT GIHQKKEILD  180
QVAHRLTEEA EKLDIPFQFN PVVSKLENLD FDKLRVKTGE ALAISSILQL HSLLAWDDEA  240
LKRKSPRLLK GSSGIHLQRV LPLSQSTLGD MLEKDMVNGY TASPDSTSSS PASLTTSNSM  300
NMESFLSALW GLSPKVMVVT EQDCNHNGPT LMDRLLEALY SYAALFDCLE STVSRTSLER  360
LRVEKMIFGE EIKNIIACEG TERKERHEKL EKWFQRFDQA GFGNVPLSYY GMLQARRFIQ  420
SYGCEGYRMR DENGCVLICW QDRPMFSISA WRSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-43104541381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G024100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131568.10.0hypothetical protein PHAVU_011G024100g
RefseqXP_007131569.10.0hypothetical protein PHAVU_011G024100g
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV7ADC70.0V7ADC7_PHAVU; Uncharacterized protein
STRINGXP_007131568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]