PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G019200.1
Common NamePHAVU_011G019200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 323aa    MW: 36074.6 Da    PI: 5.793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G019200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Phvul.011G019200.1 14 KGPWTPEEDNILVDYIHKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++l++++++ lG++ W++Ia +++ gRt++++k+ w+++l
  Phvul.011G019200.1  67 RGKFSQEEEQLIINLHAVLGNK-WSAIAGHLP-GRTDNEIKNLWNTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.653961IPR017930Myb domain
SuperFamilySSF466895.5E-3211108IPR009057Homeodomain-like
SMARTSM007177.4E-161363IPR001005SANT/Myb domain
PfamPF002494.1E-181461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-251568IPR009057Homeodomain-like
CDDcd001671.46E-121661No hitNo description
PROSITE profilePS5129426.41362116IPR017930Myb domain
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PfamPF002492.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2769116IPR009057Homeodomain-like
CDDcd001674.95E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRAPSSDES GLKKGPWTPE EDNILVDYIH KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQLIIN LHAVLGNKWS AIAGHLPGRT DNEIKNLWNT HLKKKLLQMG  120
LDPVTHRPRS DHLDLLSSLQ QLLAATDIFT NSWDINVARL QSDATELAKL QLLHNILQVL  180
GANPSSNMDL LNPFGPSLNE VLGLDQSKLQ NPYNGSTGFV SQNQPNFQSF EAPSQQQGLP  240
NHMKSEKVDE QLGASYSLPT PLDSLPNLVS ASPECSAGKE MENKVNPNEF CEPSSTSTTF  300
EMWGDFMYEE VTDAYWKDLM EQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G019200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1086510.0AB108651.1 Glycine max MYB101 mRNA for transcription factor MYB101, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131513.10.0hypothetical protein PHAVU_011G019200g
SwissprotQ9S9Z23e-86MYB93_ARATH; Transcription factor MYB93
TrEMBLV7AD760.0V7AD76_PHAVU; Uncharacterized protein
STRINGXP_007131513.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-95myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]