PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G018600.1
Common NamePHAVU_011G018600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 364aa    MW: 40096.2 Da    PI: 8.3815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G018600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10324426
                        ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                         +Cr+f+r G C+yG+rC+++H+
  Phvul.011G018600.1  3 DICRNFQR-GSCQYGERCRYSHV 24
                        69******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-4125IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-8224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-7326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRDICRNFQR GSCQYGERCR YSHVTQQRKP NDQGFGGQNG SHQQRSTNPF GFGSGSGSQQ  60
QQQKSKPFGF GAQNSSQLNG GPRPEYKPNQ YKPFENKWNR QPSKPQNGVK SDNNPQPVEH  120
RCTDPDNCKR QIAEDFEKEK PIWILTCYSH CKGAPCDIVG DISYEELRAS AYEDAKRGMS  180
LQSIVEKERN ILKSKMLEFE KLLSEPYQKP VSSSLDSQRP QSIGANANQF SGTSQSNGPL  240
SVSSFSQLGS SMNMGFGRPS APPTNTLAQP SFFGVGVTSG NFGVQSNPHS TQVDLTMFPG  300
STQPTSTTFN NSGPNTMFQT TSDVQLSNKL QAENVSGDIS IWLKDKWNPG EIPEEAPPDS  360
LVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G018600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131504.10.0hypothetical protein PHAVU_011G018600g
TrEMBLV7AF670.0V7AF67_PHAVU; Uncharacterized protein
STRINGXP_007131504.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.25e-64C3H family protein