PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G017700.1 | ||||||||
Common Name | PHAVU_011G017700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GRF | ||||||||
Protein Properties | Length: 323aa MW: 36342.2 Da PI: 7.4775 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.8 | 2.2e-24 | 75 | 119 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++ +k+CErH+hrgr+rsrk++e+ Phvul.011G017700.1 75 DPEPGRCRRTDGKKWRCSKEAYPESKYCERHMHRGRNRSRKPVES 119 79****************************************986 PP | |||||||
2 | QLQ | 61.2 | 2.8e-21 | 20 | 56 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+++L++Q+l++Ky++a++PvP++L+++iqk Phvul.011G017700.1 20 SPFTVSQWEELEHQALIFKYMLAGLPVPHNLVLPIQK 56 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-12 | 20 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.723 | 21 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.8E-15 | 21 | 55 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.11 | 75 | 119 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-20 | 76 | 118 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MNNSGGGTLM GLSNGYYGRS PFTVSQWEEL EHQALIFKYM LAGLPVPHNL VLPIQKSFFH 60 HPTLSYCSFY GKKVDPEPGR CRRTDGKKWR CSKEAYPESK YCERHMHRGR NRSRKPVESQ 120 TVTQSSSTVT SLDGGSGRSR TLNFQNLPAN GFGNLQGTDS GTHHTNYHVD SIPYAILSKE 180 CRYLQGLKSE GGDHIFFSEA SGSNKVLQME SHLEQTWPLM STRVVSFTTS KSTLLHSDFP 240 QHSFLSGEYA SEEHLKEEDH QSLRPFFNEW PKSRDSWSAL EDERSNQTAF STTQLSISIP 300 MSSDISATSS QSPHGENEIQ FR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. | |||||
UniProt | Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269|PubMed:24532604, ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747, ECO:0000269|PubMed:27250749, ECO:0000305|PubMed:26187814, ECO:0000305|PubMed:27107174, ECO:0000305|PubMed:27250747, ECO:0000305|PubMed:27250749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G017700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-139 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007131487.1 | 0.0 | hypothetical protein PHAVU_011G017700g | ||||
Swissprot | Q6AWY4 | 3e-76 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
Swissprot | Q6ZIK5 | 7e-76 | GRF4_ORYSJ; Growth-regulating factor 4 | ||||
TrEMBL | V7AHC9 | 0.0 | V7AHC9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007131487.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-44 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G017700.1 |
Entrez Gene | 18614872 |