PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G005800.1
Common NamePHAVU_011G005800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 22938.7 Da    PI: 9.5259
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G005800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.13e-25957149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        krien   rqvtf+kRr+g+lKKA+ELSvLCdae+a+ ifs +gkl e 
  Phvul.011G005800.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIALFIFSAHGKLTEL 57
                        79********************************************986 PP
2K-box58.82.3e-20911721899
               K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++e++ Lk+ei++Lq+++R l G + ++ ++ eL+ Le++Le+ + +iRs K++++l++ie l+ ke  l e+nk+L++k+ 
  Phvul.011G005800.1  91 KEESNVLKQEIQKLQKSIRYLFGVGNKTSTMDELEVLEKNLETWIYHIRSMKTNIMLQEIEALKDKEGTLTEANKYLHAKIV 172
                         7899****************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.254161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-27174IPR002100Transcription factor, MADS-box
CDDcd002654.22E-38278No hitNo description
PRINTSPR004041.8E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.2287177IPR002487Transcription factor, K-box
PfamPF014866.1E-2091171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARGKVQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIALFIFSA HGKLTELATK  60
GTMQGLIERY MKFTRGALPE APPQPLLLDA KEESNVLKQE IQKLQKSIRY LFGVGNKTST  120
MDELEVLEKN LETWIYHIRS MKTNIMLQEI EALKDKEGTL TEANKYLHAK IVENSAIHNF  180
VQFATDASYP LIIQDGSFQL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15173172MEF2C
5f28_B2e-15173172MEF2C
5f28_C2e-15173172MEF2C
5f28_D2e-15173172MEF2C
6byy_A2e-15174173MEF2 CHIMERA
6byy_B2e-15174173MEF2 CHIMERA
6byy_C2e-15174173MEF2 CHIMERA
6byy_D2e-15174173MEF2 CHIMERA
6bz1_A2e-15174173MEF2 CHIMERA
6bz1_B2e-15174173MEF2 CHIMERA
6bz1_C2e-15174173MEF2 CHIMERA
6bz1_D2e-15174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G005800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991421e-174BT099142.1 Soybean clone JCVI-FLGm-16J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131342.11e-148hypothetical protein PHAVU_011G005800g
SwissprotQ388411e-70AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLV7AGZ41e-147V7AGZ4_PHAVU; Uncharacterized protein
STRINGXP_007131342.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-69AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]