PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G158700.1 | ||||||||
Common Name | PHAVU_010G158700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22802.9 Da PI: 10.6389 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 80 | 130 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+++l+g+ Phvul.010G158700.1 80 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 130 69*******.**********32....25**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.50E-15 | 79 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 80 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 80 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-14 | 80 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-32 | 80 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 80 | 137 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.2E-11 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTMNHEIYLH ALTTTTANYF LAKSETAPSQ ALDSSQKLRY ETALEGIAAV VGEHVLFGTT 60 SSLHVPDTPK KTAGVSASKS YRGVRKRPWG RWSAEIRDRI GRCRHWLGTF DTAEEAARAY 120 DAAARRLRGA KARTNFKIPS VLPLSPSSEG GAVKPKAARN NARKCSSVEQ LFSGVPQTRG 180 NDYGGENKKV EVDLKLGVKF GVANTRIVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 74 | 136 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G158700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-143 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135791.1 | 1e-154 | hypothetical protein PHAVU_010G158700g | ||||
TrEMBL | V7AR53 | 1e-153 | V7AR53_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135791.1 | 1e-154 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13023 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 5e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G158700.1 |
Entrez Gene | 18618591 |